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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
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<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/blends-team/med/commit/379e050d83ae2d57323e316e740af3a353e1f78d">379e050d</a></strong>
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<span>by Steffen Möller</span>
<i>at 2018-07-07T12:39:57+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removed libgff-perl from bio-dev</pre>
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<h4>1 changed file:</h4>
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<a href="#3d25417c31299024a0cfbb4f432de60be1f22234">
tasks/bio-dev
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<h4>Changes:</h4>
<li id="3d25417c31299024a0cfbb4f432de60be1f22234">
<a href="https://salsa.debian.org/blends-team/med/commit/379e050d83ae2d57323e316e740af3a353e1f78d#3d25417c31299024a0cfbb4f432de60be1f22234"><strong>tasks/bio-dev</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -245,16 +245,18 @@ Pkg-Description: platform for chemo- and bioinformatics based on Eclipse</td>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"></span>
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246
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<td class="diff-line-num new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">libgff</span><span class="p">-</span><span class="n" style="color: #333;">dev</span></span>
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247
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<td class="diff-line-num new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="mosel"></span>
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248
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<td class="diff-line-num new_line old" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">libgff</span><span class="p">-</span><span class="n" style="color: #333;">perl</span></span>
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249
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<td class="diff-line-num new_line old" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC249" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">sanger</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">Software</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">GFF</span><span class="p">/</span></span>
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<td class="diff-line-num old old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
250
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<td class="diff-line-num new_line old" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="mosel"><span class="n" style="color: #333;">Responsible</span><span class="p">:</span> <span class="n" style="color: #333;">David</span> <span class="n" style="color: #333;">Paleino</span> <span class="p"><</span><span class="n" style="color: #333;">d</span><span class="p">.</span><span class="n" style="color: #333;">paleino</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span></span>
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251
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<td class="diff-line-num new_line old" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC251" class="line" lang="mosel"><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">GPL</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">+</span></span>
</pre>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="mosel"><span class="n" style="color: #333;">WNPP</span><span class="p">:</span> <span class="m" style="color: #099;">468826</span></span>
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<td class="diff-line-num old old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
253
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="mosel"><span class="n" style="color: #333;">Pkg</span><span class="p">-</span><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">Perl</span> <span class="n" style="color: #333;">bindings</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">GFF</span> <span class="n" style="color: #333;">Annotation</span> <span class="n" style="color: #333;">Protocol</span></span>
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<td class="diff-line-num old old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
254
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<td class="diff-line-num new_line old" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="mosel"> <span class="n" style="color: #333;">GFF</span> <span class="p">(</span><span class="n" style="color: #333;">Gene</span> <span class="n" style="color: #333;">Finding</span> <span class="n" style="color: #333;">Feature</span><span class="p">)</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">describing</span> <span class="n" style="color: #333;">genes</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span></span>
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<td class="diff-line-num old old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="mosel"> <span class="n" style="color: #333;">features</span> <span class="n" style="color: #333;">associated</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">DNA</span><span class="p">,</span> <span class="n" style="color: #333;">RNA</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Protein</span> <span class="n" style="color: #333;">sequences</span><span class="p">.</span></span>
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256
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="mosel"> <span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">provides</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">Perl</span> <span class="n" style="color: #333;">module</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">GFF</span> <span class="n" style="color: #333;">objects</span><span class="p">.</span></span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">libgff</span><span class="p">-</span><span class="n" style="color: #333;">perl</span></span>
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<td class="diff-line-num new new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">sanger</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">Software</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">GFF</span><span class="p">/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">Responsible</span><span class="p">:</span> <span class="n" style="color: #333;">David</span> <span class="n" style="color: #333;">Paleino</span> <span class="p"><</span><span class="n" style="color: #333;">d</span><span class="p">.</span><span class="n" style="color: #333;">paleino</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">GPL</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">+</span></span>
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<td class="diff-line-num new new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">WNPP</span><span class="p">:</span> <span class="m" style="color: #099;">468826</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="mosel"><span class="p">#</span><span class="n" style="color: #333;">Pkg</span><span class="p">-</span><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">Perl</span> <span class="n" style="color: #333;">bindings</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">GFF</span> <span class="n" style="color: #333;">Annotation</span> <span class="n" style="color: #333;">Protocol</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="mosel"><span class="p">#</span> <span class="n" style="color: #333;">GFF</span> <span class="p">(</span><span class="n" style="color: #333;">Gene</span> <span class="n" style="color: #333;">Finding</span> <span class="n" style="color: #333;">Feature</span><span class="p">)</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">describing</span> <span class="n" style="color: #333;">genes</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="mosel"><span class="p">#</span> <span class="n" style="color: #333;">features</span> <span class="n" style="color: #333;">associated</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">DNA</span><span class="p">,</span> <span class="n" style="color: #333;">RNA</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Protein</span> <span class="n" style="color: #333;">sequences</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="mosel"><span class="p">#</span> <span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="mosel"><span class="p">#</span> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">provides</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">Perl</span> <span class="n" style="color: #333;">module</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">GFF</span> <span class="n" style="color: #333;">objects</span><span class="p">.</span></span>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="mosel"><span class="p">#</span></span>
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<td class="diff-line-num new old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="mosel"><span class="p">#</span> <span class="n" style="color: #333;">Dead</span> <span class="n" style="color: #333;">upstream</span><span class="p">,</span> <span class="n" style="color: #333;">presumably</span> <span class="n" style="color: #333;">obsoleted</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">metacpan</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">pod</span><span class="p">/</span><span class="n" style="color: #333;">distribution</span><span class="p">/</span><span class="n" style="color: #333;">BioPerl</span><span class="p">/</span><span class="n" style="color: #333;">Bio</span><span class="p">/</span><span class="n" style="color: #333;">Tools</span><span class="p">/</span><span class="n" style="color: #333;">GFF</span><span class="p">.</span><span class="n" style="color: #333;">pm</span></span>
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258
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<td class="diff-line-num new_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="mosel"></span>
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259
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">pysam</span></span>
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260
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="mosel"></span>
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