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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/commit/ed2b5628045bf385fdf5bcd93508929650a98696">ed2b5628</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-04T15:05:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop additional information from packages that are available now
</pre>
</li>
</ul>
<h4>1 changed file:</h4>
<ul>
<li class="file-stats">
<a href="#26b0fba1305554e48a6078ef69d0cfe948ad5765">
tasks/bio
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="26b0fba1305554e48a6078ef69d0cfe948ad5765">
<a href="https://salsa.debian.org/blends-team/med/commit/ed2b5628045bf385fdf5bcd93508929650a98696#26b0fba1305554e48a6078ef69d0cfe948ad5765"><strong>tasks/bio</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1912" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1912,37 +1912,8 @@ Pkg-Description: processes, clusters and annotates EST data</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1912" class="line" lang="mosel"><span class="n" style="color: #333;">Remark</span><span class="p">:</span> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">ships</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">BioLinux</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">envgen</span><span class="p">.</span><span class="n" style="color: #333;">nox</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">biolinux</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="1913" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1913
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1913" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1914
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<td class="diff-line-num new_line" data-linenumber="1914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1914
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1914" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">lamarc</span></span>
</pre>
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1915
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<td class="diff-line-num new_line old" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1915" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">evolution</span><span class="p">.</span><span class="n" style="color: #333;">genetics</span><span class="p">.</span><span class="n" style="color: #333;">washington</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/</span><span class="n" style="color: #333;">lamarc</span><span class="p">/</span><span class="n" style="color: #333;">index</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1916" class="line" lang="mosel"><span class="n" style="color: #333;">Pkg</span><span class="p">-</span><span class="n" style="color: #333;">URL</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">nebc</span><span class="p">.</span><span class="n" style="color: #333;">nox</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">linux</span><span class="p">/</span><span class="n" style="color: #333;">dists</span><span class="p">/</span><span class="n" style="color: #333;">unstable</span><span class="p">/</span><span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">linux</span><span class="p">/</span><span class="n" style="color: #333;">binary</span><span class="p">-</span><span class="n" style="color: #333;">i386</span><span class="p">/</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1917
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<td class="diff-line-num new_line old" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1917" class="line" lang="mosel"><span class="n" style="color: #333;">Remark</span><span class="p">:</span> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">ships</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">BioLinux</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">envgen</span><span class="p">.</span><span class="n" style="color: #333;">nox</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">biolinux</span><span class="p">.</span><span class="n" style="color: #333;">html</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1918
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<td class="diff-line-num new_line old" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1918" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">In</span> <span class="m" style="color: #099;">1</span><span class="p">/</span><span class="m" style="color: #099;">2018</span> <span class="n" style="color: #333;">upstream</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">apparently</span> <span class="n" style="color: #333;">updated</span> <span class="n" style="color: #333;">their</span> <span class="n" style="color: #333;">tarball</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">help</span> <span class="n" style="color: #333;">the</span></span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1919" class="line" lang="mosel"> <span class="n" style="color: #333;">redistribution</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">their</span> <span class="n" style="color: #333;">software</span><span class="p">.</span> <span class="n" style="color: #333;">Someone</span> <span class="n" style="color: #333;">please</span> <span class="n" style="color: #333;">go</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">it</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1915
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1915" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="1916" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1916
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1916" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">lucy</span></span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="1922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1922
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<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1922" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">lucy</span><span class="p">.</span><span class="n" style="color: #333;">sourceforge</span><span class="p">.</span><span class="n" style="color: #333;">net</span><span class="p">/</span></span>
</pre>
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1923
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<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1923" class="line" lang="mosel"><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">GPL</span></span>
</pre>
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1924
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<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC1924" class="line" lang="mosel"><span class="n" style="color: #333;">Responsible</span><span class="p">:</span> <span class="n" style="color: #333;">BioLinux</span> <span class="p">-</span> <span class="n" style="color: #333;">Dan</span> <span class="n" style="color: #333;">Swan</span> <span class="p"><</span><span class="n" style="color: #333;">dswan</span><span class="p">@</span><span class="n" style="color: #333;">ceh</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">></span></span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1925" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1925
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1925" class="line" lang="mosel"><span class="n" style="color: #333;">Pkg</span><span class="p">-</span><span class="n" style="color: #333;">URL</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">nebc</span><span class="p">.</span><span class="n" style="color: #333;">nox</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">linux</span><span class="p">/</span><span class="n" style="color: #333;">dists</span><span class="p">/</span><span class="n" style="color: #333;">unstable</span><span class="p">/</span><span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">linux</span><span class="p">/</span><span class="n" style="color: #333;">binary</span><span class="p">-</span><span class="n" style="color: #333;">i386</span><span class="p">/</span></span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1926" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1926
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1926" class="line" lang="mosel"><span class="n" style="color: #333;">Pkg</span><span class="p">-</span><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">DNA</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">quality</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">vector</span> <span class="n" style="color: #333;">trimming</span> <span class="n" style="color: #333;">tool</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1927
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1927" class="line" lang="mosel"> <span class="n" style="color: #333;">Lucy</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">utility</span> <span class="n" style="color: #333;">that</span> <span class="n" style="color: #333;">prepares</span> <span class="n" style="color: #333;">raw</span> <span class="n" style="color: #333;">DNA</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">fragments</span> <span class="n" style="color: #333;">for</span></span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1928
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1928" class="line" lang="mosel"> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">assembly</span><span class="p">,</span> <span class="n" style="color: #333;">possibly</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIGR</span> <span class="n" style="color: #333;">Assembler</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">cleanup</span></span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1929" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1929
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1929" class="line" lang="mosel"> <span class="n" style="color: #333;">process</span> <span class="n" style="color: #333;">includes</span> <span class="n" style="color: #333;">quality</span> <span class="n" style="color: #333;">assessment</span><span class="p">,</span> <span class="n" style="color: #333;">confidence</span> <span class="n" style="color: #333;">reassurance</span><span class="p">,</span> <span class="n" style="color: #333;">vector</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1930" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1930
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1930" class="line" lang="mosel"> <span class="n" style="color: #333;">trimming</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">vector</span> <span class="n" style="color: #333;">removal</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">primary</span> <span class="n" style="color: #333;">advantage</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">Lucy</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">other</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1931" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1931
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1931" class="line" lang="mosel"> <span class="n" style="color: #333;">similar</span> <span class="n" style="color: #333;">utilities</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">that</span> <span class="n" style="color: #333;">it</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">fully</span> <span class="n" style="color: #333;">integrated</span><span class="p">,</span> <span class="n" style="color: #333;">stand</span> <span class="n" style="color: #333;">alone</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1932" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1932
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1932" class="line" lang="mosel"> <span class="n" style="color: #333;">program</span><span class="p">.</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1933" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1933
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1933" class="line" lang="mosel"> <span class="p">.</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1934
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1934" class="line" lang="mosel"> <span class="n" style="color: #333;">Lucy</span> <span class="n" style="color: #333;">was</span> <span class="n" style="color: #333;">designed</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">written</span> <span class="n" style="color: #333;">at</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">Institute</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Genomic</span> <span class="n" style="color: #333;">Research</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1935
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1935" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">TIGR</span><span class="p">,</span> <span class="n" style="color: #333;">now</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">J</span><span class="p">.</span> <span class="n" style="color: #333;">Craig</span> <span class="n" style="color: #333;">Venter</span> <span class="n" style="color: #333;">Institute</span><span class="p">),</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">it</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">used</span> <span class="n" style="color: #333;">here</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1936" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1936
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1936" class="line" lang="mosel"> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">several</span> <span class="n" style="color: #333;">years</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">clean</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">data</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">automated</span> <span class="n" style="color: #333;">DNA</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1937
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1937" class="line" lang="mosel"> <span class="n" style="color: #333;">sequencers</span> <span class="n" style="color: #333;">prior</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">assembly</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">downstream</span> <span class="k" style="font-weight: 600;">uses</span><span class="p">.</span>  <span class="n" style="color: #333;">The</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1938
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1938" class="line" lang="mosel"> <span class="n" style="color: #333;">quality</span> <span class="n" style="color: #333;">trimming</span> <span class="n" style="color: #333;">portion</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">lucy</span> <span class="n" style="color: #333;">makes</span> <span class="n" style="color: #333;">use</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">phred</span> <span class="n" style="color: #333;">quality</span> <span class="n" style="color: #333;">scores</span><span class="p">,</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1939
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1939" class="line" lang="mosel"> <span class="n" style="color: #333;">such</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">those</span> <span class="n" style="color: #333;">produced</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">automated</span> <span class="n" style="color: #333;">sequencers</span> <span class="n" style="color: #333;">based</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1940" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1940
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1940" class="line" lang="mosel"> <span class="n" style="color: #333;">Sanger</span> <span class="n" style="color: #333;">sequencing</span> <span class="n" style="color: #333;">method</span><span class="p">.</span>  <span class="k" style="font-weight: 600;">As</span> <span class="n" style="color: #333;">such</span><span class="p">,</span> <span class="n" style="color: #333;">lucy</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">’</span><span class="n" style="color: #333;">s</span> <span class="n" style="color: #333;">quality</span> <span class="n" style="color: #333;">trimming</span> <span class="n" style="color: #333;">may</span> <span class="k" style="font-weight: 600;">not</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1941" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1941
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1941" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">appropriate</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">produced</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">some</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">new</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1942" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1942
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1942" class="line" lang="mosel"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">“</span><span class="k" style="font-weight: 600;">next</span><span class="p">-</span><span class="n" style="color: #333;">generation</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">”</span> <span class="n" style="color: #333;">sequencers</span><span class="p">.</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1943" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1943
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1943" class="line" lang="mosel"> <span class="p">.</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1944
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1944" class="line" lang="mosel"> <span class="n" style="color: #333;">See</span> <span class="n" style="color: #333;">also</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">SourceForge</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">at</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">lucy</span><span class="p">.</span><span class="n" style="color: #333;">sourceforge</span><span class="p">.</span><span class="n" style="color: #333;">net</span><span class="p">/.</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1945
</td>
<td class="diff-line-num new_line old" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1945" class="line" lang="mosel"><span class="n" style="color: #333;">Remark</span><span class="p">:</span> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">ships</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">BioLinux</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">envgen</span><span class="p">.</span><span class="n" style="color: #333;">nox</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">biolinux</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1946" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1946
</td>
<td class="diff-line-num new_line" data-linenumber="1917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1917
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1917" class="line" lang="mosel"></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1947
</td>
<td class="diff-line-num new_line" data-linenumber="1918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1918
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1918" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">maxd</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1948
</td>
<td class="diff-line-num new_line" data-linenumber="1919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1919
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1919" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">bioinf</span><span class="p">.</span><span class="n" style="color: #333;">man</span><span class="p">.</span><span class="n" style="color: #333;">ac</span><span class="p">.</span><span class="n" style="color: #333;">uk</span><span class="p">/</span><span class="n" style="color: #333;">microarray</span><span class="p">/</span><span class="n" style="color: #333;">maxd</span><span class="p">/</span></span>
</pre>
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