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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/5c05edc9953f2dfb1ff543e8833ddf76516320b1">5c05edc9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-11T22:00:16+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">blast is actually ncbi-blast+
</pre>
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<h4>3 changed files:</h4>
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<a href="#1fa14af30ec5db2d2a24865610c71f2bfdbbd126">
covid-19_doc/bio_covid-19_dependencies
</a>
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<li class="file-stats">
<a href="#8a0c01883456a1514ce9078deb9a9cd201172df4">
covid-19_doc/bio_covid-19_dependencies_query
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<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
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<h4>Changes:</h4>
<li id="1fa14af30ec5db2d2a24865610c71f2bfdbbd126">
<a href="https://salsa.debian.org/blends-team/med/-/commit/5c05edc9953f2dfb1ff543e8833ddf76516320b1#1fa14af30ec5db2d2a24865610c71f2bfdbbd126"><strong>covid-19_doc/bio_covid-19_dependencies</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ ascat</td>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">bcftools</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">bedtools</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">biopython</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"><span class="idiff left right">blast</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"><span class="idiff left right">ncbi-blast+</span></span>
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17
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">bowtie2</span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">busco</span>
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19
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">bustools</span>
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<li id="8a0c01883456a1514ce9078deb9a9cd201172df4">
<a href="https://salsa.debian.org/blends-team/med/-/commit/5c05edc9953f2dfb1ff543e8833ddf76516320b1#8a0c01883456a1514ce9078deb9a9cd201172df4"><strong>covid-19_doc/bio_covid-19_dependencies_query</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,7 +81,7 @@ SELECT package, string_agg(architecture, ',') as architectures FROM (</td>
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81
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bcftools'</span><span class="p">,</span></span>
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82
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bedtools'</span><span class="p">,</span></span>
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83
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="mosel"><span class="s1" style="color: #d14;">'biopython'</span><span class="p">,</span></span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="mosel"><span class="s1" style="color: #d14;">'<span class="idiff left right">blast</span>'</span><span class="p">,</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"><span class="s1" style="color: #d14;">'<span class="idiff left right">ncbi-blast+</span>'</span><span class="p">,</span></span>
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85
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bowtie2'</span><span class="p">,</span></span>
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86
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="mosel"><span class="s1" style="color: #d14;">'busco'</span><span class="p">,</span></span>
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87
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bustools'</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/blends-team/med/-/commit/5c05edc9953f2dfb1ff543e8833ddf76516320b1#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">Mon</span><span class="p">,</span> <span class="m" style="color: #099;">11</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">21</span><span class="p">:</span><span class="m" style="color: #099;"><span class="idiff left">48</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">13</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">Mon</span><span class="p">,</span> <span class="m" style="color: #099;">11</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">21</span><span class="p">:</span><span class="m" style="color: #099;"><span class="idiff left">59</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">45</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="p">|</span> <span class="n" style="color: #333;">architectures</span> </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="p">-----------------------------+-------------------------</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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8
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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">blast</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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10
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +21,7 @@ Last-Update: Mon, 11 May 2020 21:48:13 +0200</td>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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23
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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24
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
25
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">picard</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">prodigal</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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