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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/6f63bf368fb06c9614cb234b051f7d23c5d8d6a0">6f63bf36</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-12T08:25:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rename guppy to bio-guppy to not mess up with existing Debian package guppy
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/6610381fc07786ab5e39839c314fe39e686088a7">6610381f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-12T08:37:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use temporary table to allow more flexibility
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/81223c9ff6ccb57285f655e68af716a19a0a23cd">81223c9f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-12T09:02:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Debian binary package names
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/2e727e5a9c1fbce435e4db6bdbf3a21746d69e53">2e727e5a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-12T09:24:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Mark packages in non-free
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8a0c01883456a1514ce9078deb9a9cd201172df4">
covid-19_doc/bio_covid-19_dependencies_query
</a>
</li>
<li class="file-stats">
<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="8a0c01883456a1514ce9078deb9a9cd201172df4">
<a href="https://salsa.debian.org/blends-team/med/-/compare/5c05edc9953f2dfb1ff543e8833ddf76516320b1...2e727e5a9c1fbce435e4db6bdbf3a21746d69e53#8a0c01883456a1514ce9078deb9a9cd201172df4"><strong>covid-19_doc/bio_covid-19_dependencies_query</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,115 +58,122 @@ done</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="mosel"><span class="n" style="color: #333;">output</span><span class="p">=</span><span class="s2" style="color: #d14;">"bio_covid-19_dependencies_result"</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="mosel"></span>
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<td class="diff-line-num old old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="mosel"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">psql</span><span class="p">-</span><span class="k" style="font-weight: 600;">public</span><span class="p">-</span><span class="n" style="color: #333;">udd</span> <span class="p">>/</span><span class="n" style="color: #333;">dev</span><span class="p">/</span><span class="n" style="color: #333;">null</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<td class="diff-line-num new_line old" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="mosel"> <span class="n" style="color: #333;">RUNPSQL</span><span class="p">=</span><span class="n" style="color: #333;">psql</span><span class="p">-</span><span class="k" style="font-weight: 600;">public</span><span class="p">-</span><span class="n" style="color: #333;">udd</span></span>
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<td class="diff-line-num new_line old" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="mosel"><span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="mosel"> <span class="n" style="color: #333;">RUNPSQL</span><span class="p">=</span><span class="s2" style="color: #d14;">"psql $SERVICE"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="mosel"><span class="n" style="color: #333;">fi</span></span>
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<td class="diff-line-num old old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="mosel"><span class="n" style="color: #333;">echo</span> <span class="s2" style="color: #d14;">"Last-Update: `date -R`"</span> <span class="p">></span> <span class="s2" style="color: #d14;">"$output"</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="mosel"><span class="n" style="color: #333;">echo</span> <span class="p">>></span> <span class="s2" style="color: #d14;">"$output"</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="mosel"><span class="p">$</span><span class="n" style="color: #333;">RUNPSQL</span> <span class="p">>></span><span class="s2" style="color: #d14;">"$output"</span> <span class="p"><<</span><span class="n" style="color: #333;">EOT</span></span>
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<td class="diff-line-num old old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="mosel"><span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">string_agg</span><span class="p">(</span><span class="n" style="color: #333;">architecture</span><span class="p">,</span> <span class="s1" style="color: #d14;">','</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">architectures</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">WHERE</span></span>
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<td class="diff-line-num old old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s1" style="color: #d14;">'all'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'amd64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'arm64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'ppc64el'</span> <span class="p">)</span> <span class="k" style="font-weight: 600;">and</span></span>
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<td class="diff-line-num old old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span></span>
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<td class="diff-line-num old old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="mosel"><span class="s1" style="color: #d14;">'nextflow'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="mosel"><span class="s1" style="color: #d14;">'snakemake'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="mosel"><span class="s1" style="color: #d14;">'nf-core'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="mosel"><span class="s1" style="color: #d14;">'abacas'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="mosel"><span class="s1" style="color: #d14;">'allelecount'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="mosel"><span class="s1" style="color: #d14;">'ascat'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bcftools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bedtools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="mosel"><span class="s1" style="color: #d14;">'biopython'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="mosel"><span class="s1" style="color: #d14;">'ncbi-blast+'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bowtie2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="mosel"><span class="s1" style="color: #d14;">'busco'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bustools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="mosel"><span class="s1" style="color: #d14;">'bwa'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="mosel"><span class="s1" style="color: #d14;">'cat'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="mosel"><span class="s1" style="color: #d14;">'centrifuge'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="mosel"><span class="s1" style="color: #d14;">'changeo'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="mosel"><span class="s1" style="color: #d14;">'cutadapt'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="mosel"><span class="s1" style="color: #d14;">'diamond'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="mosel"><span class="s1" style="color: #d14;">'deeptools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="mosel"><span class="s1" style="color: #d14;">'drop-seq-tools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="mosel"><span class="s1" style="color: #d14;">'fastp'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="mosel"><span class="s1" style="color: #d14;">'fastqc'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="mosel"><span class="s1" style="color: #d14;">'filtlong'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="mosel"><span class="s1" style="color: #d14;">'freebayes'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="mosel"><span class="s1" style="color: #d14;">'gatk'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="mosel"><span class="s1" style="color: #d14;">'graphmap2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="mosel"><span class="s1" style="color: #d14;">'guppy'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="mosel"><span class="s1" style="color: #d14;">'htslib'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="mosel"><span class="s1" style="color: #d14;">'htseq'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="mosel"><span class="s1" style="color: #d14;">'ivar'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="mosel"><span class="s1" style="color: #d14;">'java'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="mosel"><span class="s1" style="color: #d14;">'kallisto'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="mosel"><span class="s1" style="color: #d14;">'kraken2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="mosel"><span class="s1" style="color: #d14;">'krona'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="mosel"><span class="s1" style="color: #d14;">'lumpy'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="mosel"><span class="s1" style="color: #d14;">'manta'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="mosel"><span class="s1" style="color: #d14;">'megahit'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="mosel"><span class="s1" style="color: #d14;">'metabat'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="mosel"><span class="s1" style="color: #d14;">'minia'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="mosel"><span class="s1" style="color: #d14;">'minimap2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="mosel"><span class="s1" style="color: #d14;">'multiqc'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="mosel"><span class="s1" style="color: #d14;">'muscle'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="mosel"><span class="s1" style="color: #d14;">'nanolyse'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="mosel"><span class="s1" style="color: #d14;">'nanoplot'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="mosel"><span class="s1" style="color: #d14;">'numpy'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="mosel"><span class="s1" style="color: #d14;">'pandas'</span><span class="p">,</span></span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="mosel"><span class="s1" style="color: #d14;">'parallel-fastq-dump'</span><span class="p">,</span></span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="mosel"><span class="s1" style="color: #d14;">'picard'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="mosel"><span class="s1" style="color: #d14;">'porechop'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="mosel"><span class="s1" style="color: #d14;">'presto'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="mosel"><span class="s1" style="color: #d14;">'prodigal'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="mosel"><span class="s1" style="color: #d14;">'pycoqc'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="mosel"><span class="s1" style="color: #d14;">'qcat'</span><span class="p">,</span></span>
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129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="mosel"><span class="s1" style="color: #d14;">'qualimap'</span><span class="p">,</span></span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="mosel"><span class="s1" style="color: #d14;">'quast'</span><span class="p">,</span></span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-alakazam'</span><span class="p">,</span></span>
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132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-ggplot2'</span><span class="p">,</span></span>
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133
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-rmarkdown'</span><span class="p">,</span></span>
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134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-shazam'</span><span class="p">,</span></span>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-tigger'</span><span class="p">,</span></span>
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136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-locfit'</span><span class="p">,</span></span>
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137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-bioc-deseq2'</span><span class="p">,</span></span>
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138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-bioc-tximport'</span><span class="p">,</span></span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-data.table'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-rlang'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-ggrepel'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-dt'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-pheatmap'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-corrplot'</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-reshape2'</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-plotly'</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-scales'</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-crosstalk'</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-gprofiler'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-bioc-summarizedexperiment'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-bioc-rtracklayer'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="mosel"><span class="s1" style="color: #d14;">'r-cran-rjson'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="mosel"><span class="s1" style="color: #d14;">'salmon'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="mosel"><span class="s1" style="color: #d14;">'samtools'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="mosel"><span class="s1" style="color: #d14;">'snpeff'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="mosel"><span class="s1" style="color: #d14;">'snpsift'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="mosel"><span class="s1" style="color: #d14;">'spades'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="mosel"><span class="s1" style="color: #d14;">'sra-toolkit'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="mosel"><span class="s1" style="color: #d14;">'rna-star'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="mosel"><span class="s1" style="color: #d14;">'strelka'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="mosel"><span class="s1" style="color: #d14;">'tiddit'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="mosel"><span class="s1" style="color: #d14;">'trim-galore'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="mosel"><span class="s1" style="color: #d14;">'unicycler'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="mosel"><span class="s1" style="color: #d14;">'varscan2'</span><span class="p">,</span></span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="mosel"><span class="s1" style="color: #d14;">'vcftools'</span><span class="p">,</span></span>
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166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="mosel"><span class="s1" style="color: #d14;">'vep'</span><span class="p">,</span></span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="mosel"><span class="s1" style="color: #d14;">'vg'</span></span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="mosel"><span class="p">)</span></span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="mosel"><span class="p">)</span> <span class="n" style="color: #333;">tmp</span> <span class="n" style="color: #333;">GROUP</span> <span class="n" style="color: #333;">by</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span></span>
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<td class="diff-line-num new old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"><span class="n" style="color: #333;">psql</span> <span class="p">--</span><span class="n" style="color: #333;">quiet</span> <span class="p">$</span><span class="n" style="color: #333;">SERVICE</span> <span class="p">>></span><span class="s2" style="color: #d14;">"$output"</span> <span class="p"><<</span><span class="n" style="color: #333;">EOT</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"><span class="n" style="color: #333;">BEGIN</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"><span class="n" style="color: #333;">CREATE</span> <span class="n" style="color: #333;">TEMPORARY</span> <span class="n" style="color: #333;">TABLE</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">text</span> <span class="p">)</span> <span class="p">;</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="mosel"><span class="n" style="color: #333;">INSERT</span> <span class="n" style="color: #333;">INTO</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="n" style="color: #333;">VALUES</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nextflow'</span><span class="p">),</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snakemake'</span><span class="p">),</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nf-core'</span><span class="p">),</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'abacas'</span><span class="p">),</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'allelecount'</span><span class="p">),</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ascat'</span><span class="p">),</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bcftools'</span><span class="p">),</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bedtools'</span><span class="p">),</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-biopython'</span><span class="p">),</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ncbi-blast+'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">blast</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bowtie2'</span><span class="p">),</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'busco'</span><span class="p">),</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bustools'</span><span class="p">),</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bwa'</span><span class="p">),</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'cat'</span><span class="p">),</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'centrifuge'</span><span class="p">),</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'changeo'</span><span class="p">),</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'cutadapt'</span><span class="p">),</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'diamond'</span><span class="p">),</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-deeptools'</span><span class="p">),</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'drop-seq-tools'</span><span class="p">),</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'fastp'</span><span class="p">),</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'fastqc'</span><span class="p">),</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'filtlong'</span><span class="p">),</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'freebayes'</span><span class="p">),</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'gatk'</span><span class="p">),</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'graphmap2'</span><span class="p">),</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bio-guppy'</span><span class="p">),</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'libhts-dev'</span><span class="p">),</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-htseq'</span><span class="p">),</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ivar'</span><span class="p">),</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kallisto'</span><span class="p">),</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kraken2'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'radiant'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">krona</span> <span class="p">-</span> <span class="n" style="color: #333;">Debian</span> <span class="n" style="color: #333;">had</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">change</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">name</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lumpy'</span><span class="p">),</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'manta'</span><span class="p">),</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'megahit'</span><span class="p">),</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'metabat'</span><span class="p">),</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'minia'</span><span class="p">),</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'minimap2'</span><span class="p">),</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'multiqc'</span><span class="p">),</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'muscle'</span><span class="p">),</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nanolyse'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nanoplot'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-numpy'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-pandas'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'parallel-fastq-dump'</span><span class="p">),</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'picard-tools'</span><span class="p">),</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'porechop'</span><span class="p">),</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'presto'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'prodigal'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'pycoqc'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'qcat'</span><span class="p">),</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'qualimap'</span><span class="p">),</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'quast'</span><span class="p">),</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-alakazam'</span><span class="p">),</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-ggplot2'</span><span class="p">),</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rmarkdown'</span><span class="p">),</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-shazam'</span><span class="p">),</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-tigger'</span><span class="p">),</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-locfit'</span><span class="p">),</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-deseq2'</span><span class="p">),</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-tximport'</span><span class="p">),</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-data.table'</span><span class="p">),</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rlang'</span><span class="p">),</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-ggrepel'</span><span class="p">),</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-dt'</span><span class="p">),</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-pheatmap'</span><span class="p">),</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-corrplot'</span><span class="p">),</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-reshape2'</span><span class="p">),</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-plotly'</span><span class="p">),</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-scales'</span><span class="p">),</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-crosstalk'</span><span class="p">),</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-gprofiler'</span><span class="p">),</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-summarizedexperiment'</span><span class="p">),</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-rtracklayer'</span><span class="p">),</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rjson'</span><span class="p">),</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'salmon'</span><span class="p">),</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'samtools'</span><span class="p">),</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snpeff'</span><span class="p">),</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snpsift'</span><span class="p">),</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'spades'</span><span class="p">),</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'sra-toolkit'</span><span class="p">),</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'rna-star'</span><span class="p">),</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'strelka'</span><span class="p">),</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'tiddit'</span><span class="p">),</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'trim-galore'</span><span class="p">),</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'unicycler'</span><span class="p">),</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'varscan'</span><span class="p">),</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vcftools'</span><span class="p">),</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vep'</span><span class="p">),</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vg'</span><span class="p">)</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="mosel"><span class="p">;</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="mosel"><span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architectures</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">section</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="n" style="color: #333;">co</span></span>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">string_agg</span><span class="p">(</span><span class="n" style="color: #333;">architecture</span><span class="p">,</span> <span class="s1" style="color: #d14;">','</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AS</span> <span class="n" style="color: #333;">architectures</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">WHERE</span></span>
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<td class="diff-line-num new new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="mosel"> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="s1" style="color: #d14;">'all'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'amd64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'arm64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'ppc64el'</span> <span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="p">*</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span></span>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">tmp</span> <span class="n" style="color: #333;">GROUP</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">p</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="k" style="font-weight: 600;">CASE</span> <span class="n" style="color: #333;">WHEN</span> <span class="n" style="color: #333;">substring</span><span class="p">(</span><span class="n" style="color: #333;">section</span> <span class="k" style="font-weight: 600;">from</span> <span class="m" style="color: #099;">0</span> <span class="n" style="color: #333;">for</span> <span class="m" style="color: #099;">10</span><span class="p">)</span> <span class="p">=</span> <span class="s1" style="color: #d14;">'non-free/'</span> <span class="k" style="font-weight: 600;">THEN</span> <span class="s1" style="color: #d14;">'non-free'</span> <span class="k" style="font-weight: 600;">ELSE</span> <span class="s1" style="color: #d14;">'main'</span> <span class="k" style="font-weight: 600;">END</span> <span class="k" style="font-weight: 600;">AS</span> <span class="n" style="color: #333;">section</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">release</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s1" style="color: #d14;">'sid'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="p">*</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">s</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span></span>
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<td class="diff-line-num old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="mosel"> <span class="p">;</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="mosel"><span class="k" style="font-weight: 600;">END</span><span class="p">;</span></span>
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172
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<td class="diff-line-num new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="mosel"><span class="n" style="color: #333;">EOT</span></span></pre>
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<a href="https://salsa.debian.org/blends-team/med/-/compare/5c05edc9953f2dfb1ff543e8833ddf76516320b1...2e727e5a9c1fbce435e4db6bdbf3a21746d69e53#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Mon</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">11</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">21</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">59</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">45</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Tue</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">12</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">09</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">23</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">52</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="p">|</span> <span class="n" style="color: #333;">architectures</span> </span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="mosel"><span class="p">-----------------------------+-------------------------</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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6
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">centrifuge</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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15
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">kallisto</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">kraken2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">minia</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">picard</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">prodigal</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">pycoqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">qcat</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">deseq2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">rtracklayer</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">summarizedexperiment</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">tximport</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">alakazam</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">corrplot</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">crosstalk</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">table</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">dt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">ggplot2</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">ggrepel</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">gprofiler</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">locfit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">pheatmap</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">plotly</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
45
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">reshape2</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span><span class="p">,</span><span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rjson</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rlang</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rmarkdown</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
49
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">scales</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span><span class="p">,</span><span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
52
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
53
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">salmon</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<td class="diff-line-num old old_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
54
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="mosel"> <span class="n" style="color: #333;">samtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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<td class="diff-line-num old old_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="mosel"> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<td class="diff-line-num old old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<td class="diff-line-num old old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
57
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="mosel"> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">toolkit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<td class="diff-line-num old old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="mosel"> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="mosel"> <span class="n" style="color: #333;">unicycler</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="mosel"> <span class="n" style="color: #333;">vcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span></span>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;">vg</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">57</span> <span class="n" style="color: #333;">Zeilen</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="p">|</span> <span class="n" style="color: #333;">architectures</span> <span class="p">|</span> <span class="n" style="color: #333;">section</span> </span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"><span class="p">-----------------------------+-------------------------+----------</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> <span class="p">|</span> </span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">ascat</span> <span class="p">|</span> <span class="p">|</span> </span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">guppy</span> <span class="p">|</span> <span class="p">|</span> </span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span> <span class="p">|</span> <span class="p">|</span> </span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">centrifuge</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> </span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">drop</span><span class="p">-</span><span class="n" style="color: #333;">seq</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">filtlong</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">gatk</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">graphmap2</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">ivar</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">kallisto</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">kraken2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">lumpy</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">manta</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">megahit</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">metabat</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">minia</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">nextflow</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="mosel"> <span class="n" style="color: #333;">nf</span><span class="p">-</span><span class="n" style="color: #333;">core</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">parallel</span><span class="p">-</span><span class="n" style="color: #333;">fastq</span><span class="p">-</span><span class="n" style="color: #333;">dump</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="mosel"> <span class="n" style="color: #333;">picard</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span><span class="p">,</span><span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="mosel"> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="mosel"> <span class="n" style="color: #333;">presto</span> <span class="p">|</span> <span class="p">|</span> </span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="mosel"> <span class="n" style="color: #333;">prodigal</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">pycoqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">numpy</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">pandas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="mosel"> <span class="n" style="color: #333;">qcat</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">qualimap</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="mosel"> <span class="n" style="color: #333;">quast</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="mosel"> <span class="n" style="color: #333;">radiant</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">deseq2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">rtracklayer</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">summarizedexperiment</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">tximport</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">alakazam</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">corrplot</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">crosstalk</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">table</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">dt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">ggplot2</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">ggrepel</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">gprofiler</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">locfit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">pheatmap</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">plotly</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">reshape2</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span><span class="p">,</span><span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rjson</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rlang</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">rmarkdown</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">scales</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span><span class="p">,</span><span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">salmon</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">samtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">snpsift</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">toolkit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">tiddit</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">unicycler</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"> <span class="n" style="color: #333;">varscan</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">free</span></span>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"> <span class="n" style="color: #333;">vcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"> <span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"> <span class="n" style="color: #333;">vg</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">92</span> <span class="n" style="color: #333;">Zeilen</span><span class="p">)</span></span>
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63
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="mosel"></span></pre>
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