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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/617ef7aab2e71d9fa372dd04a8ce26159475f554">617ef7aa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-14T08:52:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More packages in new
</pre>
</li>
</ul>
<h4>1 changed file:</h4>
<ul>
<li class="file-stats">
<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
<a href="https://salsa.debian.org/blends-team/med/-/commit/617ef7aab2e71d9fa372dd04a8ce26159475f554#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">T<span class="idiff left">ue</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">12</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">11</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">43</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">23</span></span><span class="idiff"> </span><span class="p"><span class="idiff">+</span></span><span class="m" style="color: #099;"><span class="idiff right">00</span>00</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">T<span class="idiff left">hu</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">14</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">08</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">38</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">41</span></span><span class="idiff"> </span><span class="p"><span class="idiff">+</span></span><span class="m" style="color: #099;"><span class="idiff right">02</span>00</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel">           <span class="k" style="font-weight: 600;">package</span>           <span class="p">|</span>    <span class="n" style="color: #333;">architectures</span>    <span class="p">|</span> <span class="n" style="color: #333;">section</span>  <span class="p">|</span>                  <span class="n" style="color: #333;">releases</span>                   <span class="p">|</span>          <span class="n" style="color: #333;">conda</span>           <span class="p">|</span>  <span class="n" style="color: #333;">bio</span><span class="p">.</span><span class="n" style="color: #333;">tools</span>   </span>
</pre>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="p">-----------------------------+---------------------+----------+---------------------------------------------+--------------------------+--------------</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span>                      <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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6
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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span>                 <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="idiff left right">   </span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span>                 <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left right">new</span></span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span>                    <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span>                 <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span></span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span>                    <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">biotools</span>                 <span class="p">|</span> <span class="n" style="color: #333;">bedtools</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">guppy</span>                   <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span>                                             <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span>                     <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span>                  <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span>                       <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="idiff left right">   </span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span>                       <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left right">new</span></span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span>                    <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                <span class="p">|</span> <span class="n" style="color: #333;">bustools</span>                 <span class="p">|</span> <span class="n" style="color: #333;">BUStools</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span>                         <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">bwa</span>                      <span class="p">|</span> <span class="n" style="color: #333;">BWA</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span>                         <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span>                                             <span class="p">|</span>                          <span class="p">|</span> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,12 +78,12 @@ Last-Update: Tue, 12 May 2020 11:43:23 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span>               <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span>                 <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span>               <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span>                 <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span>                    <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">star</span>                     <span class="p">|</span> <span class="n" style="color: #333;">star</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span>               <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="idiff left right">   </span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span>               <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left right">new</span></span>                                         <span class="p">|</span>                          <span class="p">|</span> </span>
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<td class="diff-line-num new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">salmon</span>                      <span class="p">|</span> <span class="n" style="color: #333;">amd64</span>               <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">salmon</span>                   <span class="p">|</span> <span class="n" style="color: #333;">salmon</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">samtools</span>                    <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">samtools</span>                 <span class="p">|</span> <span class="n" style="color: #333;">samtools</span></span>
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<td class="diff-line-num new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="mosel"> <span class="n" style="color: #333;">snakemake</span>                   <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span>                <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">snpeff</span>                      <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">snpeff</span>    <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">snpsift</span>                     <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="idiff left right">                                        </span>    <span class="p">|</span>                          <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">snpsift</span>                     <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">snpeff</span></span>    <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">spades</span>                      <span class="p">|</span> <span class="n" style="color: #333;">amd64</span>               <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">spades</span>                   <span class="p">|</span> <span class="n" style="color: #333;">Spades</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">toolkit</span>                 <span class="p">|</span> <span class="n" style="color: #333;">amd64</span>               <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                         <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span>                <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">strelka</span>                     <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span>                                             <span class="p">|</span>                          <span class="p">|</span> </span>
</pre>
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