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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/d4f94c3dea691ff64d5c8a6e51507bab4253153c">d4f94c3d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-22T22:02:25+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More packages in new and salsa
</pre>
</li>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
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<h4>Changes:</h4>
<li id="6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
<a href="https://salsa.debian.org/blends-team/med/-/commit/d4f94c3dea691ff64d5c8a6e51507bab4253153c#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Thu</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">21</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">06</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">46</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">08</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Fri</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">22</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">May</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">21</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">54</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">19</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="p">|</span> <span class="n" style="color: #333;">architectures</span> <span class="p">|</span> <span class="n" style="color: #333;">section</span> <span class="p">|</span> <span class="n" style="color: #333;">releases</span> <span class="p">|</span> <span class="n" style="color: #333;">conda</span> <span class="p">|</span> <span class="n" style="color: #333;">bio</span><span class="p">.</span><span class="n" style="color: #333;">tools</span> </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="p">-----------------------------+---------------------+----------+---------------------------------------------+--------------------------+--------------</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> </span>
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6
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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">sid</span></span><span class="idiff right"> </span> <span class="p">|</span> <span class="n" style="color: #333;">cancerit</span><span class="p">-</span><span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span> <span class="p">|</span> <span class="n" style="color: #333;">cancerit</span><span class="p">-</span><span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> </span>
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7
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span></span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">biotools</span> <span class="p">|</span> <span class="n" style="color: #333;">bedtools</span></span>
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9
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">guppy</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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10
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span></span>
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11
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<td class="diff-line-num new_line old" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">sid</span></span><span class="idiff right"> </span> <span class="p">|</span> <span class="p">|</span> </span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span> <span class="p">|</span> <span class="p">|</span> </span>
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12
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">BUStools</span></span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">BWA</span></span>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span><span class="p">-</span><span class="n" style="color: #333;">bat</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,10 +16,10 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200</td>
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16
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> </span>
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17
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span></span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span><span class="p">-</span><span class="n" style="color: #333;">aligner</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">Diamond</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">drop</span><span class="p">-</span><span class="n" style="color: #333;">seq</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="idiff left right"> </span> <span class="p">|</span> <span class="p">|</span> </span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">drop</span><span class="p">-</span><span class="n" style="color: #333;">seq</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left right">new</span></span> <span class="p">|</span> <span class="p">|</span> </span>
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20
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> </span>
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21
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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">FastQC</span></span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<td class="diff-line-num new_line old" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">filtlong</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="idiff left right"> </span> <span class="p">|</span> </span>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">filtlong</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left right">filtlong</span></span> <span class="p">|</span> </span>
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23
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span></span>
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24
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">gatk</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">gatk</span> <span class="p">|</span> <span class="p">|</span> </span>
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25
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">graphmap2</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">graphmap2</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,12 +35,12 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200</td>
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">multiqc</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">MUSCLE</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="idiff left right"> </span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">nanolyse</span></span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">blast</span> <span class="p">|</span> <span class="n" style="color: #333;">blast</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">nextflow</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">nextflow</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">nf</span><span class="p">-</span><span class="n" style="color: #333;">core</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="mosel"> <span class="n" style="color: #333;">parallel</span><span class="p">-</span><span class="n" style="color: #333;">fastq</span><span class="p">-</span><span class="n" style="color: #333;">dump</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="idiff left right"> </span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="mosel"> <span class="n" style="color: #333;">parallel</span><span class="p">-</span><span class="n" style="color: #333;">fastq</span><span class="p">-</span><span class="n" style="color: #333;">dump</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">parallel</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">fastq</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">dump</span></span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">picard</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">picard</span> <span class="p">|</span> <span class="n" style="color: #333;">Picard_tools</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="mosel"> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="mosel"> <span class="n" style="color: #333;">presto</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,7 +86,7 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">snpsift</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">Spades</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">toolkit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="idiff left right"> </span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">strelka</span></span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">tiddit</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="mosel"> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">unicycler</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">unicycler</span> <span class="p">|</span> <span class="n" style="color: #333;">unicycler</span></span>
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