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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/294f89dbc20eb282e2e3f54190a66b36a098b695">294f89db</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T23:07:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">lumpy is lumpy-sv, new push in UDD uncovered more accepted packages and packages in new
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8a0c01883456a1514ce9078deb9a9cd201172df4">
covid-19_doc/bio_covid-19_dependencies_query
</a>
</li>
<li class="file-stats">
<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="8a0c01883456a1514ce9078deb9a9cd201172df4">
<a href="https://salsa.debian.org/blends-team/med/-/commit/294f89dbc20eb282e2e3f54190a66b36a098b695#8a0c01883456a1514ce9078deb9a9cd201172df4"><strong>covid-19_doc/bio_covid-19_dependencies_query</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,7 +108,7 @@ INSERT INTO covid19_packages VALUES</td>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kraken2'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'radiant'</span><span class="p">),</span>  <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">krona</span> <span class="p">-</span> <span class="n" style="color: #333;">Debian</span> <span class="n" style="color: #333;">had</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">change</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lighter'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lumpy'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lumpy<span class="idiff left right">-sv</span>'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'magicblast'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'manta'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'mash'</span><span class="p">),</span></span>
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<br>
</li>
<li id="6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
<a href="https://salsa.debian.org/blends-team/med/-/commit/294f89dbc20eb282e2e3f54190a66b36a098b695#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">Wed</span><span class="p">,</span> <span class="m" style="color: #099;">27</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">2<span class="idiff left">2</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">30</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">50</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;">Wed</span><span class="p">,</span> <span class="m" style="color: #099;">27</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">2<span class="idiff left">3</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">05</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">59</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel">       <span class="k" style="font-weight: 600;">package</span>       <span class="p">|</span>    <span class="n" style="color: #333;">architectures</span>    <span class="p">|</span> <span class="n" style="color: #333;">section</span>  <span class="p">|</span>                   <span class="n" style="color: #333;">releases</span>                   <span class="p">|</span>        <span class="n" style="color: #333;">conda</span>         <span class="p">|</span>  <span class="n" style="color: #333;">bio</span><span class="p">.</span><span class="n" style="color: #333;">tools</span>   </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="p">---------------------+---------------------+----------+----------------------------------------------+----------------------+--------------</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span>               <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                 <span class="p">|</span> <span class="n" style="color: #333;">busco</span>                <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span>            <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                 <span class="p">|</span> <span class="n" style="color: #333;">bustools</span>             <span class="p">|</span> <span class="n" style="color: #333;">BUStools</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span>                 <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">bwa</span>                  <span class="p">|</span> <span class="n" style="color: #333;">BWA</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span><span class="p">-</span><span class="n" style="color: #333;">bat</span>             <span class="p">|</span> <span class="idiff left">                    </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">new</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">cat</span>                  <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span><span class="p">-</span><span class="n" style="color: #333;">bat</span>             <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">ppc64el</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff">     </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">cat</span>                  <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">centrifuge</span>          <span class="p">|</span> <span class="n" style="color: #333;">amd64</span>               <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">centrifuge</span>           <span class="p">|</span> <span class="n" style="color: #333;">Centrifuge</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">changeo</span>             <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">changeo</span>              <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">cutadapt</span>            <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span>             <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,17 +22,17 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">fastp</span>               <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">fastp</span>                <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">fastqc</span>              <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">fastqc</span>               <span class="p">|</span> <span class="n" style="color: #333;">FastQC</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">filtlong</span>            <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                 <span class="p">|</span> <span class="n" style="color: #333;">filtlong</span>             <span class="p">|</span> </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">flash</span>               <span class="p">|</span> <span class="idiff left">                    </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">new</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">flash</span>                <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">flash</span>               <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">ppc64el</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff">     </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">flash</span>                <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">freebayes</span>           <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span>            <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">gatk</span>                <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">gatk</span>       <span class="p">|</span> <span class="n" style="color: #333;">gatk4</span>                <span class="p">|</span> </span>
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">graphmap2</span>           <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">graphmap2</span>  <span class="p">|</span> <span class="n" style="color: #333;">graphmap</span>             <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">ivar</span>                <span class="p">|</span> <span class="idiff left">                    </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">new</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">ivar</span>                 <span class="p">|</span> </span>
</pre>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">ivar</span>                <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="idiff">         </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff">     </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">ivar</span>                 <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">kallisto</span>            <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                 <span class="p">|</span> <span class="n" style="color: #333;">kallisto</span>             <span class="p">|</span> <span class="n" style="color: #333;">kallisto</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">kmc</span>                 <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">kmc</span>                  <span class="p">|</span> <span class="n" style="color: #333;">KMC</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">kraken2</span>             <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                                 <span class="p">|</span> <span class="n" style="color: #333;">kraken2</span>              <span class="p">|</span> <span class="n" style="color: #333;">kraken</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span>          <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">htslib</span>               <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">lighter</span>             <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span>                                              <span class="p">|</span>                      <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">lumpy</span><span class="idiff left">               </span><span class="p"><span class="idiff">|</span></span><span class="idiff">                     </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff">                                              </span><span class="p"><span class="idiff">|</span></span><span class="idiff right">         </span>             <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">lumpy</span><span class="p"><span class="idiff left">-</span></span><span class="n" style="color: #333;"><span class="idiff">sv</span></span><span class="idiff">            </span><span class="p"><span class="idiff">|</span></span><span class="idiff">                     </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lumpy</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">sv</span></span><span class="idiff">   </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">lumpy</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">sv</span></span>             <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">magicblast</span>          <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span>                                              <span class="p">|</span>                      <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">manta</span>               <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">manta</span>      <span class="p">|</span> <span class="n" style="color: #333;">manta</span>                <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">mash</span>                <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">mash</span>                 <span class="p">|</span> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -72,9 +72,9 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200</td>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span>       <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span>             <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span>       <span class="p">|</span> <span class="n" style="color: #333;">all</span>                 <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span>             <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span>            <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">star</span>                 <span class="p">|</span> <span class="n" style="color: #333;">star</span></span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span>       <span class="p">|</span> <span class="idiff left">                    </span><span class="p"><span class="idiff">|</span></span><span class="idiff">          </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">new</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">ascat</span>                <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span>       <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">all</span></span><span class="idiff">                 </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff">     </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">sid</span></span>                                          <span class="p">|</span> <span class="n" style="color: #333;">ascat</span>                <span class="p">|</span> </span>
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<td class="diff-line-num new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">salmon</span>              <span class="p">|</span> <span class="n" style="color: #333;">amd64</span>               <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">salmon</span>               <span class="p">|</span> <span class="n" style="color: #333;">salmon</span></span>
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<td class="diff-line-num old old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">samclip</span>             <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="idiff left">                                             </span><span class="p"><span class="idiff">|</span></span><span class="idiff right">        </span>              <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">samclip</span>             <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;"><span class="idiff left">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">samclip</span></span><span class="idiff">    </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">samclip</span></span>              <span class="p">|</span> </span>
</pre>
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78
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<td class="diff-line-num new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">samtools</span>            <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">samtools</span>             <span class="p">|</span> <span class="n" style="color: #333;">samtools</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
79
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<td class="diff-line-num new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">sepp</span>                <span class="p">|</span>                     <span class="p">|</span>          <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">sepp</span>       <span class="p">|</span> <span class="n" style="color: #333;">sepp</span>                 <span class="p">|</span> </span>
</pre>
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">seqtk</span>               <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span>     <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span>                          <span class="p">|</span> <span class="n" style="color: #333;">seqtk</span>                <span class="p">|</span> <span class="n" style="color: #333;">seqtk</span></span>
</pre>
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