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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/med">Debian Blends Team / med</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/blends-team/med/-/commit/84b7dfeb2cc4b1c2b1f47dea1d04237031ca19b0">84b7dfeb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-06T07:19:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Keep the sequence of packages identical to original table at https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8a0c01883456a1514ce9078deb9a9cd201172df4">
covid-19_doc/bio_covid-19_dependencies_query
</a>
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<li class="file-stats">
<a href="#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6">
covid-19_doc/bio_covid-19_dependencies_result
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="8a0c01883456a1514ce9078deb9a9cd201172df4">
<a href="https://salsa.debian.org/blends-team/med/-/commit/84b7dfeb2cc4b1c2b1f47dea1d04237031ca19b0#8a0c01883456a1514ce9078deb9a9cd201172df4"><strong>covid-19_doc/bio_covid-19_dependencies_query</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,146 +64,152 @@ echo >> "$output"</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="mosel"><span class="n" style="color: #333;">psql</span> <span class="p">--</span><span class="n" style="color: #333;">quiet</span> <span class="p">$</span><span class="n" style="color: #333;">SERVICE</span> <span class="p">>></span><span class="s2" style="color: #d14;">"$output"</span> <span class="p"><<</span><span class="n" style="color: #333;">EOT</span></span>
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65
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="mosel"><span class="n" style="color: #333;">BEGIN</span><span class="p">;</span></span>
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66
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66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="mosel"></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="mosel"><span class="n" style="color: #333;">CREATE</span> <span class="n" style="color: #333;">TEMPORARY</span> <span class="n" style="color: #333;">TABLE</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">text</span> <span class="p">)</span> <span class="p">;</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"><span class="n" style="color: #333;">CREATE</span> <span class="n" style="color: #333;">TEMPORARY</span> <span class="n" style="color: #333;">TABLE</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="p">(</span> <span class="n" style="color: #333;"><span class="idiff left">id</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">SERIAL</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">PRIMARY</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">KEY</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">text</span> <span class="p">)</span> <span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="mosel"><span class="n" style="color: #333;">INSERT</span> <span class="n" style="color: #333;">INTO</span> <span class="n" style="color: #333;">covid19_packages</span> <span class="n" style="color: #333;">VALUES</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nextflow'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'capsule'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snakemake'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'artic'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bcbio'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'pigx-rnaseq'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'scrnaseq'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'shovill'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'smartseq2'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'viralcon'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nf-core'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'abacas'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'allelecount'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-anndata'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'libargs-dev'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'arvados'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-other-ascat'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'libatomicbitvector-dev'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'augustus'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bandage'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'libbbhash-dev'</span><span class="p">),</span></span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bcftools'</span><span class="p">),</span></span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bedtools'</span><span class="p">),</span></span>
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92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-biopython'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ncbi-blast+'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">blast</span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bowtie2'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'busco'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bustools'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bwa'</span><span class="p">),</span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'cat-bat'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'centrifuge'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'changeo'</span><span class="p">),</span></span>
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101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'cutadapt'</span><span class="p">),</span></span>
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102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'diamond-aligner'</span><span class="p">),</span></span>
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103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-deeptools'</span><span class="p">),</span></span>
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104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'drop-seq-tools'</span><span class="p">),</span></span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'fastp'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'fastqc'</span><span class="p">),</span></span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'filtlong'</span><span class="p">),</span></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'flappie'</span><span class="p">),</span></span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'flash'</span><span class="p">),</span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'flye'</span><span class="p">),</span></span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'freebayes'</span><span class="p">),</span></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'gatk'</span><span class="p">),</span></span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'tigr-glimmer'</span><span class="p">),</span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'graphmap2'</span><span class="p">),</span></span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'bio-guppy'</span><span class="p">),</span></span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-h5py'</span><span class="p">),</span></span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-htsfilter'</span><span class="p">),</span></span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'libhts-dev'</span><span class="p">),</span></span>
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119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-htseq'</span><span class="p">),</span></span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'iitii'</span><span class="p">),</span></span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ivar'</span><span class="p">),</span></span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kallisto'</span><span class="p">),</span></span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kmc'</span><span class="p">),</span></span>
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124
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'kraken2'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
125
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'radiant'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">krona</span> <span class="p">-</span> <span class="n" style="color: #333;">Debian</span> <span class="n" style="color: #333;">had</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">change</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">name</span></span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lighter'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'lumpy-sv'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
128
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'magicblast'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'manta'</span><span class="p">),</span></span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'mash'</span><span class="p">),</span></span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'megahit'</span><span class="p">),</span></span>
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132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'metabat'</span><span class="p">),</span></span>
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133
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'metaspades'</span><span class="p">),</span></span>
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134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'minia'</span><span class="p">),</span></span>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'minimap2'</span><span class="p">),</span></span>
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136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'mmap_allocator'</span><span class="p">),</span></span>
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137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'mmmulti'</span><span class="p">),</span></span>
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138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'mosdepth'</span><span class="p">),</span></span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'multiqc'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'muscle'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nanolyse'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'nanoplot'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-numpy'</span><span class="p">),</span></span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'python3-pandas'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'parallel-fastq-dump'</span><span class="p">),</span></span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'picard-tools'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'pilon'</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'porechop'</span><span class="p">),</span></span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'pplacer'</span><span class="p">),</span></span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'presto'</span><span class="p">),</span></span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'prinseq-lite'</span><span class="p">),</span></span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'prodigal'</span><span class="p">),</span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'pycoqc'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'qcat'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
155
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<td class="diff-line-num new_line old" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'qualimap'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'quast'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<td class="diff-line-num new_line old" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-alakazam'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
158
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<td class="diff-line-num new_line old" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-shazam'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<td class="diff-line-num new_line old" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-tigger'</span><span class="p">),</span></span>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'nextflow'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'capsule'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'snakemake'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'artic'</span><span class="p">),</span></span>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bcbio'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'pigx-rnaseq'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'scrnaseq'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'shovill'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'smartseq2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'viralcon'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'nf-core'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'abacas'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'allelecount'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-anndata'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'libargs-dev'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
</td>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'arvados'</span><span class="p">),</span></span>
</pre>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'r-other-ascat'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'libatomicbitvector-dev'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'augustus'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bandage'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'libbbhash-dev'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bcftools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bedtools'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-biopython'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'ncbi-blast+'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">blast</span></span>
</pre>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bowtie2'</span><span class="p">),</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'busco'</span><span class="p">),</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bustools'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bwa'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'cat-bat'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'centrifuge'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'changeo'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'cutadapt'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'diamond-aligner'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-deeptools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'drop-seq-tools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'fastp'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'fastqc'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'filtlong'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'flappie'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'flash'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'flye'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'freebayes'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'gatk'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'tigr-glimmer'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'graphmap2'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'bio-guppy'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-h5py'</span><span class="p">),</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'r-bioc-htsfilter'</span><span class="p">),</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'libhts-dev'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-htseq'</span><span class="p">),</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'iitii'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'ivar'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'kallisto'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'kmc'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'kraken2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'radiant'</span><span class="p">),</span> <span class="p">--</span> <span class="p">==</span> <span class="n" style="color: #333;">krona</span> <span class="p">-</span> <span class="n" style="color: #333;">Debian</span> <span class="n" style="color: #333;">had</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">change</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">name</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'lighter'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'lumpy-sv'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'magicblast'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'manta'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'mash'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'masurca'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'mcaller'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'mecat2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'medaka'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'megahit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'megalodon'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'metabat'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'metaspades'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'minia'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'minimap2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'minitour'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'libmmap-allocator-dev'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'mmmulti'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'mosdepth'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'multiqc'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'muscle'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'nanolyse'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'nanoplot'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-numpy'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'python3-pandas'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'parallel-fastq-dump'</span><span class="p">),</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'picard-tools'</span><span class="p">),</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'pilon'</span><span class="p">),</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'porechop'</span><span class="p">),</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'pplacer'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'presto'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'prinseq-lite'</span><span class="p">),</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'prodigal'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'pycoqc'</span><span class="p">),</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'qcat'</span><span class="p">),</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'qualimap'</span><span class="p">),</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'quast'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'r-cran-alakazam'</span><span class="p">),</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'r-cran-shazam'</span><span class="p">),</span></span>
</pre>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">DEFAULT</span><span class="p">,</span><span class="s1" style="color: #d14;">'r-cran-tigger'</span><span class="p">),</span></span>
</pre>
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160
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<td class="diff-line-num new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="mosel"><span class="p">/*</span></span>
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161
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-ggplot2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rmarkdown'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-locfit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
164
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-deseq2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-tximport'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-data.table'</span><span class="p">),</span></span>
</pre>
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167
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rlang'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-ggrepel'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-dt'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-pheatmap'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-corrplot'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-reshape2'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-plotly'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-scales'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
175
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-crosstalk'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
176
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-gprofiler'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-summarizedexperiment'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-bioc-rtracklayer'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<td class="diff-line-num new_line old" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'r-cran-rjson'</span><span class="p">),</span></span>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-ggplot2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-rmarkdown'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-locfit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-bioc-deseq2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-bioc-tximport'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-data.table'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-rlang'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
</td>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-ggrepel'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC175" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-dt'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-pheatmap'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-corrplot'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-reshape2'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-plotly'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-scales'</span><span class="p">),</span></span>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-crosstalk'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-gprofiler'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-bioc-summarizedexperiment'</span><span class="p">),</span></span>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-bioc-rtracklayer'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'r-cran-rjson'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
180
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<td class="diff-line-num new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="mosel"><span class="p">*/</span></span>
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181
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'salmon'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'samclip'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'samtools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'sepp'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'seqtk'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'seqwish'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'skesa'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snpeff'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'snpsift'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'spades'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'sra-toolkit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'rna-star'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'strelka'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'tiddit'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'trim-galore'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'trimmomatic'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'umap-learn'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'unicycler'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'varscan'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vcftools'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'velvet'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'ensembl-vep'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vg'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vsearch'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'vt'</span><span class="p">),</span></span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<td class="diff-line-num new_line old" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="mosel"><span class="p">(</span><span class="s1" style="color: #d14;">'wham-align'</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'salmon'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'samclip'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'samtools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'sepp'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'seqtk'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'seqwish'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC193" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'skesa'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC194" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'snpeff'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'snpsift'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'spades'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'sra-toolkit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'rna-star'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'strelka'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
200
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC200" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'tiddit'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'trim-galore'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC202" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'trimmomatic'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC203" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'umap-learn'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'unicycler'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'varscan'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'vcftools'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'velvet'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'ensembl-vep'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
</td>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'vg'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'vsearch'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
</td>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'vt'</span><span class="p">),</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">DEFAULT</span></span><span class="p"><span class="idiff right">,</span></span><span class="s1" style="color: #d14;">'wham-align'</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
207
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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="mosel"><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
208
</td>
<td class="diff-line-num new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
209
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<td class="diff-line-num new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="mosel"><span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architectures</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">section</span><span class="p">,</span></span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,20 +227,20 @@ SELECT co.package, architectures, s.section,</td>
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">string_agg</span><span class="p">(</span><span class="n" style="color: #333;">architecture</span><span class="p">,</span> <span class="s1" style="color: #d14;">','</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AS</span> <span class="n" style="color: #333;">architectures</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="p">(</span></span>
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222
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">release</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s1" style="color: #d14;">'sid'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="mosel"> <span class="n" style="color: #333;">architecture</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="s1" style="color: #d14;">'all'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'amd64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'arm64'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'ppc64el'</span> <span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="p"><span class="idiff left right">*</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;"><span class="idiff left right">package</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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225
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<td class="diff-line-num new_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
231
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">architecture</span></span>
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<td class="diff-line-num old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
226
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">tmp</span> <span class="n" style="color: #333;">GROUP</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span></span>
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227
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">p</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span></span>
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229
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<td class="diff-line-num new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="k" style="font-weight: 600;">CASE</span> <span class="n" style="color: #333;">WHEN</span> <span class="n" style="color: #333;">substring</span><span class="p">(</span><span class="n" style="color: #333;">section</span> <span class="k" style="font-weight: 600;">from</span> <span class="m" style="color: #099;">0</span> <span class="n" style="color: #333;">for</span> <span class="m" style="color: #099;">10</span><span class="p">)</span> <span class="p">=</span> <span class="s1" style="color: #d14;">'non-free/'</span> <span class="k" style="font-weight: 600;">THEN</span> <span class="s1" style="color: #d14;">'non-free'</span> <span class="k" style="font-weight: 600;">ELSE</span> <span class="s1" style="color: #d14;">'main'</span> <span class="k" style="font-weight: 600;">END</span> <span class="k" style="font-weight: 600;">AS</span> <span class="n" style="color: #333;">section</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">release</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s1" style="color: #d14;">'sid'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="p"><span class="idiff left right">*</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;"><span class="idiff left right">package</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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231
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">s</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span></span>
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233
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<td class="diff-line-num new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">string_agg</span><span class="p">(</span><span class="n" style="color: #333;">release</span><span class="p">,</span> <span class="s1" style="color: #d14;">','</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AS</span> <span class="n" style="color: #333;">releases</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="p">(</span></span>
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<td class="diff-line-num old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
234
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<td class="diff-line-num new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"> <span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">release</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">sort</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">p</span></span>
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235
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<td class="diff-line-num new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">JOIN</span> <span class="n" style="color: #333;">releases</span> <span class="n" style="color: #333;">s</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">release</span> <span class="p">=</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">release</span></span>
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236
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="mosel"> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">release</span> <span class="k" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s1" style="color: #d14;">'sid'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'bullseye'</span><span class="p">,</span> <span class="s1" style="color: #d14;">'buster'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">AND</span></span>
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237
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<td class="diff-line-num new_line old" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="p"><span class="idiff left right">*</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">IN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="k" style="font-weight: 600;"><span class="idiff left right">package</span></span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">covid19_packages</span><span class="p">)</span></span>
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238
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<td class="diff-line-num new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">sort</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">release</span></span>
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239
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">tmp</span> <span class="n" style="color: #333;">GROUP</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;">package</span></span>
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240
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="mosel"> <span class="p">)</span> <span class="n" style="color: #333;">r</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">r</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -257,7 +263,7 @@ SELECT co.package, architectures, s.section,</td>
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257
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="mosel"> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">name</span> <span class="p">=</span> <span class="s1" style="color: #d14;">'bio.tools'</span><span class="p">)</span> <span class="n" style="color: #333;">tmp</span><span class="p">)</span> <span class="n" style="color: #333;">bt</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">bt</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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258
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<td class="diff-line-num new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">OUTER</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">DISTINCT</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">source</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">testsuite</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">packages</span> <span class="n" style="color: #333;">p</span></span>
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259
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<td class="diff-line-num new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="mosel"> <span class="n" style="color: #333;">LEFT</span> <span class="n" style="color: #333;">JOIN</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="n" style="color: #333;">source</span><span class="p">,</span> <span class="n" style="color: #333;">testsuite</span> <span class="k" style="font-weight: 600;">FROM</span> <span class="n" style="color: #333;">sources</span> <span class="n" style="color: #333;">WHERE</span> <span class="n" style="color: #333;">release</span> <span class="p">=</span> <span class="s1" style="color: #d14;">'sid'</span><span class="p">)</span> <span class="n" style="color: #333;">s</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">p</span><span class="p">.</span><span class="n" style="color: #333;">source</span> <span class="p">=</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">source</span> <span class="p">)</span> <span class="n" style="color: #333;">t</span> <span class="n" style="color: #333;">ON</span> <span class="n" style="color: #333;">co</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span> <span class="p">=</span> <span class="n" style="color: #333;">t</span><span class="p">.</span><span class="k" style="font-weight: 600;">package</span></span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="k" style="font-weight: 600;"><span class="idiff left right">package</span></span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="mosel"> <span class="n" style="color: #333;">ORDER</span> <span class="n" style="color: #333;">BY</span> <span class="n" style="color: #333;"><span class="idiff left right">id</span></span></span>
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261
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="mosel"> <span class="p">;</span></span>
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262
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="mosel"><span class="k" style="font-weight: 600;">END</span><span class="p">;</span></span>
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263
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="mosel"><span class="n" style="color: #333;">EOT</span></span></pre>
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<a href="https://salsa.debian.org/blends-team/med/-/commit/84b7dfeb2cc4b1c2b1f47dea1d04237031ca19b0#6d072c2122e74d0aa0bfeb56f2e3fd56014c34b6"><strong>covid-19_doc/bio_covid-19_dependencies_result</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Fri</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">05</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Jun</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">11</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">16</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">19</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Last</span><span class="p">-</span><span class="n" style="color: #333;">Update</span><span class="p">:</span> <span class="n" style="color: #333;"><span class="idiff left">Sat</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">06</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Jun</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">07</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">14</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">46</span></span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="p">|</span> <span class="n" style="color: #333;">architectures</span> <span class="p">|</span> <span class="n" style="color: #333;">section</span> <span class="p">|</span> <span class="n" style="color: #333;">releases</span> <span class="p">|</span> <span class="n" style="color: #333;">conda</span> <span class="p">|</span> <span class="n" style="color: #333;">bio</span><span class="p">.</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">testsuite</span> </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="p">------------------------+---------------------+----------+-----------------------------------------------+----------------------+---------------+-------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">nextflow</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">nextflow</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">capsule</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">artic</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">bcbio</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bcbio</span><span class="p">-</span><span class="n" style="color: #333;">nextgen</span> <span class="p">|</span> <span class="n" style="color: #333;">bcbio</span><span class="p">-</span><span class="n" style="color: #333;">nextgen</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">python</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">pigx</span><span class="p">-</span><span class="n" style="color: #333;">rnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">pigx</span><span class="p">-</span><span class="n" style="color: #333;">rnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">scrnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">shovill</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">smartseq2</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">viralcon</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">nf</span><span class="p">-</span><span class="n" style="color: #333;">core</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">abacas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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6
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">cancerit</span><span class="p">-</span><span class="n" style="color: #333;">allelecount</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">perl</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">artic</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">anndata</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">anndata</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">libargs</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">arvados</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">arvados</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">ascat</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"> <span class="n" style="color: #333;">libatomicbitvector</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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9
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">augustus</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">augustus</span> <span class="p">|</span> <span class="n" style="color: #333;">AUGUSTUS</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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10
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">bandage</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bandage</span> <span class="p">|</span> <span class="n" style="color: #333;">bandage</span> <span class="p">|</span> </span>
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11
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<td class="diff-line-num new_line old" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">bcbio</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">all</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">buster</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">sid</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">bcbio</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">nextgen</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">bcbio</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">nextgen</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">autopkgtest</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">pkg</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">python</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">libbbhash</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">dev</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">new</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff right"> </span></span>
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12
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">bcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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13
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">biotools</span> <span class="p">|</span> <span class="n" style="color: #333;">bedtools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">guppy</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">Biopython</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">blast</span> <span class="p">|</span> <span class="n" style="color: #333;">blast</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">bowtie2</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="diff-line-num new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">busco</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">busco</span> <span class="p">|</span> <span class="p">|</span> </span>
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17
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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bustools</span> <span class="p">|</span> <span class="n" style="color: #333;">BUStools</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">bwa</span> <span class="p">|</span> <span class="n" style="color: #333;">BWA</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<td class="diff-line-num new_line old" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">capsule</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="diff-line-num new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">cat</span><span class="p">-</span><span class="n" style="color: #333;">bat</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">cat</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
21
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<td class="diff-line-num new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="mosel"> <span class="n" style="color: #333;">centrifuge</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">centrifuge</span> <span class="p">|</span> <span class="n" style="color: #333;">Centrifuge</span> <span class="p">|</span> </span>
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22
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<td class="diff-line-num new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">changeo</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">python</span></span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<td class="diff-line-num new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">cutadapt</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">python</span></span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span><span class="p">-</span><span class="n" style="color: #333;">aligner</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">Diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
25
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<td class="diff-line-num new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span><span class="p">-</span><span class="n" style="color: #333;">aligner</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">Diamond</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">diamond</span><span class="p">-</span><span class="n" style="color: #333;">aligner</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">Diamond</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">,</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">python</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<td class="diff-line-num new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">drop</span><span class="p">-</span><span class="n" style="color: #333;">seq</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">dropseq_tools</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<td class="diff-line-num new_line old" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
28
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<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">fastp</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
29
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<td class="diff-line-num new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">fastqc</span> <span class="p">|</span> <span class="n" style="color: #333;">FastQC</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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30
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<td class="diff-line-num new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">filtlong</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">filtlong</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="mosel"> <span class="n" style="color: #333;">flappie</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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31
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<td class="diff-line-num new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
46
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="mosel"> <span class="n" style="color: #333;">flash</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">flash</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="mosel"> <span class="n" style="color: #333;">flye</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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32
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<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">freebayes</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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<td class="diff-line-num new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">gatk</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">gatk</span> <span class="p">|</span> <span class="n" style="color: #333;">gatk4</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="mosel"> <span class="n" style="color: #333;">tigr</span><span class="p">-</span><span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
34
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<td class="diff-line-num new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">graphmap2</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">graphmap2</span> <span class="p">|</span> <span class="n" style="color: #333;">graphmap</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="mosel"> <span class="n" style="color: #333;">bio</span><span class="p">-</span><span class="n" style="color: #333;">guppy</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">h5py</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">htsfilter</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">,</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="mosel"> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">htslib</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="mosel"> <span class="n" style="color: #333;">iitii</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
35
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<td class="diff-line-num new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> <span class="n" style="color: #333;">ivar</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">ivar</span> <span class="p">|</span> <span class="p">|</span> </span>
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36
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<td class="diff-line-num new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="mosel"> <span class="n" style="color: #333;">kallisto</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">kallisto</span> <span class="p">|</span> <span class="n" style="color: #333;">kallisto</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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37
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<td class="diff-line-num new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
60
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="mosel"> <span class="n" style="color: #333;">kmc</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">kmc</span> <span class="p">|</span> <span class="n" style="color: #333;">KMC</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
38
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<td class="diff-line-num new_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;">kraken2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">kraken2</span> <span class="p">|</span> <span class="n" style="color: #333;">kraken</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
39
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<td class="diff-line-num new_line old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">libargs</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
40
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<td class="diff-line-num new_line old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">libatomicbitvector</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
41
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<td class="diff-line-num new_line old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">libbbhash</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
42
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<td class="diff-line-num new_line old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">htslib</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="mosel"> <span class="n" style="color: #333;">radiant</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">krona</span> <span class="p">|</span> </span>
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43
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<td class="diff-line-num new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="mosel"> <span class="n" style="color: #333;">lighter</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">lighter</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
44
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<td class="diff-line-num new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="mosel"> <span class="n" style="color: #333;">lumpy</span><span class="p">-</span><span class="n" style="color: #333;">sv</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">lumpy</span><span class="p">-</span><span class="n" style="color: #333;">sv</span> <span class="p">|</span> <span class="p">|</span> </span>
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45
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<td class="diff-line-num new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="mosel"> <span class="n" style="color: #333;">magicblast</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
46
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<td class="diff-line-num new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="mosel"> <span class="n" style="color: #333;">manta</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">manta</span> <span class="p">|</span> <span class="n" style="color: #333;">manta</span> <span class="p">|</span> <span class="p">|</span> </span>
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47
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<td class="diff-line-num new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">mash</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">mash</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="mosel"> <span class="n" style="color: #333;">masurca</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="n" style="color: #333;">mcaller</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="n" style="color: #333;">mecat2</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">medaka</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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48
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">megahit</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">megahit</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">megalodon</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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49
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<td class="diff-line-num new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">metabat</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">metabat2</span> <span class="p">|</span> <span class="p">|</span> </span>
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50
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<td class="diff-line-num new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">metaspades</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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51
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<td class="diff-line-num new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">minia</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">minia</span> <span class="p">|</span> <span class="n" style="color: #333;">minia</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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52
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<td class="diff-line-num new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">minimap2</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
53
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<td class="diff-line-num new_line old" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">mmap_allocator</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">minitour</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">libmmap</span><span class="p">-</span><span class="n" style="color: #333;">allocator</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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54
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<td class="diff-line-num new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">mmmulti</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
55
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<td class="diff-line-num new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">mosdepth</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">mosdepth</span> <span class="p">|</span> <span class="n" style="color: #333;">mosdepth</span> <span class="p">|</span> <span class="p">|</span> </span>
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56
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<td class="diff-line-num new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> <span class="n" style="color: #333;">multiqc</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
57
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<td class="diff-line-num new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">muscle</span> <span class="p">|</span> <span class="n" style="color: #333;">MUSCLE</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
58
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<td class="diff-line-num new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="mosel"> <span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="n" style="color: #333;">nanolyse</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
59
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<td class="diff-line-num new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="n" style="color: #333;">nanoplot</span> <span class="p">|</span> <span class="p">|</span> </span>
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60
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<td class="diff-line-num new_line old" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">ncbi</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">blast</span></span><span class="p"><span class="idiff">+</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">ppc64el</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">buster</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">sid</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">blast</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">blast</span></span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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61
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<td class="diff-line-num new_line old" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">nextflow</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">nextflow</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff right"> </span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">nf</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">core</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff right"> </span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">python3</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">ppc64el</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">buster</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">sid</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff right"> </span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">python3</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">amd64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">arm64</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">ppc64el</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">buster</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">sid</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">autopkgtest</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">python3</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">pandas</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">all</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">main</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">buster</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">bullseye</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">sid</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="p"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">autopkgtest</span></span></span>
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63
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<td class="diff-line-num new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">parallel</span><span class="p">-</span><span class="n" style="color: #333;">fastq</span><span class="p">-</span><span class="n" style="color: #333;">dump</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">parallel</span><span class="p">-</span><span class="n" style="color: #333;">fastq</span><span class="p">-</span><span class="n" style="color: #333;">dump</span> <span class="p">|</span> <span class="p">|</span> </span>
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64
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<td class="diff-line-num new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">picard</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">picard</span> <span class="p">|</span> <span class="n" style="color: #333;">Picard_tools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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65
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<td class="diff-line-num new_line old" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="mosel"> <span class="n" style="color: #333;">pigx</span><span class="p">-</span><span class="n" style="color: #333;">rnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">pigx</span><span class="p">-</span><span class="n" style="color: #333;">rnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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66
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<td class="diff-line-num new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="mosel"> <span class="n" style="color: #333;">pilon</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">pilon</span> <span class="p">|</span> <span class="n" style="color: #333;">pilon</span> <span class="p">|</span> </span>
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67
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<td class="diff-line-num new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">porechop</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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68
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<td class="diff-line-num new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="mosel"> <span class="n" style="color: #333;">pplacer</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">pplacer</span> <span class="p">|</span> <span class="n" style="color: #333;">pplacer</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,42 +95,26 @@ Last-Update: Fri, 05 Jun 2020 11:16:19 +0200</td>
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70
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<td class="diff-line-num new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="mosel"> <span class="n" style="color: #333;">prinseq</span><span class="p">-</span><span class="n" style="color: #333;">lite</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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71
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<td class="diff-line-num new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="mosel"> <span class="n" style="color: #333;">prodigal</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">prodigal</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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72
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<td class="diff-line-num new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="mosel"> <span class="n" style="color: #333;">pycoqc</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">pycoqc</span> <span class="p">|</span> <span class="p">|</span> </span>
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73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">anndata</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">anndata</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
74
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<td class="diff-line-num new_line old" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">Biopython</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
75
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<td class="diff-line-num new_line old" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">deeptools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">,</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">python</span></span>
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76
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<td class="diff-line-num new_line old" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">h5py</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
77
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<td class="diff-line-num new_line old" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">htseq</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">numpy</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">numpy</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
80
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<td class="diff-line-num new_line old" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">pandas</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
81
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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="mosel"> <span class="n" style="color: #333;">qcat</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">qcat</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
82
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<td class="diff-line-num new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="mosel"> <span class="n" style="color: #333;">qualimap</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">qualimap</span> <span class="p">|</span> <span class="n" style="color: #333;">qualimap</span> <span class="p">|</span> <span class="p">|</span> </span>
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83
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<td class="diff-line-num new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="mosel"> <span class="n" style="color: #333;">quast</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">quast</span> <span class="p">|</span> <span class="n" style="color: #333;">quast</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
84
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<td class="diff-line-num new_line old" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="mosel"> <span class="n" style="color: #333;">radiant</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">krona</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
85
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<td class="diff-line-num new_line old" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">htsfilter</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">,</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
86
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<td class="diff-line-num new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">alakazam</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
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<td class="diff-line-num old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
87
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<td class="diff-line-num new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">shazam</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
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<td class="diff-line-num old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
88
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<td class="diff-line-num new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">cran</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">tigger</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
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<td class="diff-line-num old old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
89
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<td class="diff-line-num new_line old" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
90
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<td class="diff-line-num new_line old" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">other</span><span class="p">-</span><span class="n" style="color: #333;">ascat</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">ascat</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span><span class="p">-</span><span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">r</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="diff-line-num new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="mosel"> <span class="n" style="color: #333;">salmon</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">salmon</span> <span class="p">|</span> <span class="n" style="color: #333;">salmon</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="diff-line-num new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="mosel"> <span class="n" style="color: #333;">samclip</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">samclip</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<td class="diff-line-num new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="mosel"> <span class="n" style="color: #333;">samtools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">samtools</span> <span class="p">|</span> <span class="n" style="color: #333;">samtools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
94
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<td class="diff-line-num new_line old" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="mosel"> <span class="n" style="color: #333;">scrnaseq</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<td class="diff-line-num new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">sepp</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">sepp</span> <span class="p">|</span> <span class="n" style="color: #333;">sepp</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<td class="diff-line-num new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="mosel"> <span class="n" style="color: #333;">seqtk</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">seqtk</span> <span class="p">|</span> <span class="n" style="color: #333;">seqtk</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
97
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="mosel"> <span class="n" style="color: #333;">seqwish</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">seqwish</span> <span class="p">|</span> <span class="n" style="color: #333;">seqwish</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
98
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<td class="diff-line-num new_line old" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="mosel"> <span class="n" style="color: #333;">shovill</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
99
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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="mosel"> <span class="n" style="color: #333;">skesa</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">skesa</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
100
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<td class="diff-line-num new_line old" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="mosel"> <span class="n" style="color: #333;">smartseq2</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
101
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<td class="diff-line-num new_line old" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="mosel"> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">snakemake</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
102
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<td class="diff-line-num new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="mosel"> <span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<td class="diff-line-num new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="mosel"> <span class="n" style="color: #333;">snpsift</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="n" style="color: #333;">snpeff</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="mosel"> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">spades</span> <span class="p">|</span> <span class="n" style="color: #333;">Spades</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="mosel"> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">toolkit</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">sra</span><span class="p">-</span><span class="n" style="color: #333;">tools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"> <span class="n" style="color: #333;">rna</span><span class="p">-</span><span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">star</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<td class="diff-line-num new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="mosel"> <span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="n" style="color: #333;">strelka</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<td class="diff-line-num new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="mosel"> <span class="n" style="color: #333;">tiddit</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="n" style="color: #333;">tiddit</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
108
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<td class="diff-line-num new_line old" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="mosel"> <span class="n" style="color: #333;">tigr</span><span class="p">-</span><span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">glimmer</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="mosel"> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="nf" style="color: #900; font-weight: 600;">trim</span><span class="p">-</span><span class="n" style="color: #333;">galore</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="mosel"> <span class="n" style="color: #333;">trimmomatic</span> <span class="p">|</span> <span class="n" style="color: #333;">all</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">trimmomatic</span> <span class="p">|</span> <span class="n" style="color: #333;">Trimmomatic</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="diff-line-num new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="mosel"> <span class="n" style="color: #333;">umap</span><span class="p">-</span><span class="n" style="color: #333;">learn</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">new</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,10 +122,10 @@ Last-Update: Fri, 05 Jun 2020 11:16:19 +0200</td>
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<td class="diff-line-num old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<td class="diff-line-num new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="mosel"> <span class="n" style="color: #333;">varscan</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">free</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">varscan</span> <span class="p">|</span> <span class="n" style="color: #333;">varscan</span> <span class="p">|</span> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<td class="diff-line-num new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
123
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC123" class="line" lang="mosel"> <span class="n" style="color: #333;">vcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">vcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">vcftools</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
115
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<td class="diff-line-num new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="mosel"> <span class="n" style="color: #333;">velvet</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">arm64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">velvet</span> <span class="p">|</span> <span class="n" style="color: #333;">velvet</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num new old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"> <span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="n" style="color: #333;">ensembl</span><span class="p">-</span><span class="n" style="color: #333;">vep</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<td class="diff-line-num new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="mosel"> <span class="n" style="color: #333;">vg</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">vg</span> <span class="p">|</span> <span class="p">|</span> <span class="n" style="color: #333;">autopkgtest</span></span>
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<td class="diff-line-num old old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
117
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<td class="diff-line-num new_line old" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="mosel"> <span class="n" style="color: #333;">viralcon</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
118
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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="mosel"> <span class="n" style="color: #333;">vsearch</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span><span class="p">,</span><span class="n" style="color: #333;">ppc64el</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">buster</span><span class="p">,</span><span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">vsearch</span> <span class="p">|</span> <span class="n" style="color: #333;">vsearch</span> <span class="p">|</span> </span>
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119
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<td class="diff-line-num new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="mosel"> <span class="n" style="color: #333;">vt</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> <span class="p">|</span> </span>
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<td class="diff-line-num old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
120
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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="mosel"> <span class="n" style="color: #333;">wham</span><span class="p">-</span><span class="n" style="color: #333;">align</span> <span class="p">|</span> <span class="n" style="color: #333;">amd64</span> <span class="p">|</span> <span class="n" style="color: #333;">main</span> <span class="p">|</span> <span class="n" style="color: #333;">bullseye</span><span class="p">,</span><span class="n" style="color: #333;">sid</span> <span class="p">|</span> <span class="n" style="color: #333;">wham</span> <span class="p">|</span> <span class="n" style="color: #333;">wham</span> <span class="p">|</span> </span>
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121
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<td class="diff-line-num new_line old" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1<span class="idiff left right">16</span></span> <span class="n" style="color: #333;">Zeilen</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1<span class="idiff left right">25</span></span> <span class="n" style="color: #333;">Zeilen</span><span class="p">)</span></span>
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122
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="mosel"></span></pre>
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