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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/blends-team/science">Debian Blends Team / science</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55">6d9a51b6</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-11-04T08:43:20+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Re-enable packages that were portet to Python3
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<h4>10 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#4b4f0827f1e0186c53ea5094cf88b4d7fa325ee8">
tasks/chemistry
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<li class="file-stats">
<a href="#7e0814b28d3f5e69d2bd207a602da432085564fe">
tasks/dataacquisition
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<li class="file-stats">
<a href="#5c8afef60e7f1cfa16b5f8080b1dfb7b68f99b9f">
tasks/imageanalysis-dev
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<li class="file-stats">
<a href="#dd0cd9dfe02c393c31d74ac359849d3f07a4568e">
tasks/machine-learning
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<a href="#4d9e31ac9545b642eb99b099d7e252c051f6a937">
tasks/mathematics-dev
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<a href="#66a4404faa40243ac32eabbf24f246423e58b21d">
tasks/meteorology
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<a href="#9b42befa2960d21a31d57a00f694ff1541d31ba3">
tasks/neuroscience-cognitive
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<a href="#4d581ec816022db3ae6b026cc916edd38aebde55">
tasks/neuroscience-modeling
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<li class="file-stats">
<a href="#a9f3d1c550be60641aa77dc5d8da919e83f084f3">
tasks/numericalcomputation
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian-science (1.14.3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Re-enable packages that were portet to Python3</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 04 Nov 2021 08:42:40 +0100</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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1
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">debian-science (1.14.2) unstable; urgency=medium</span>
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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3
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Re-render metapackages according the package pool in bullseye</span>
</pre>
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<li id="4b4f0827f1e0186c53ea5094cf88b4d7fa325ee8">
<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#4b4f0827f1e0186c53ea5094cf88b4d7fa325ee8"><strong>tasks/chemistry</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,7 @@ Recommends: apbs, bkchem, bodr, libcdk-java, chemeq, \</td>
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20
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">viewmol</span><span class="p">,</span> <span class="n" style="color: #333;">xdrawchem</span><span class="p">,</span> <span class="n" style="color: #333;">xmakemol</span><span class="p">-</span><span class="n" style="color: #333;">gl</span> <span class="p">|</span> <span class="n" style="color: #333;">xmakemol</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">-</span><span class="n" style="color: #333;">sim</span></span>
</pre>
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21
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"><span class="n" style="color: #333;">Why</span><span class="p">:</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">DebianScience</span><span class="p">/</span><span class="n" style="color: #333;">Chemistry</span> <span class="n" style="color: #333;">wiki</span> <span class="n" style="color: #333;">page</span></span>
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22
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"></span>
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<td class="old_line diff-line-num old" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="mosel"><span class="p"><span class="idiff left right">#</span></span><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">openbabel</span></span>
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<td class="new_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">python<span class="idiff left right">3</span></span><span class="p">-</span><span class="n" style="color: #333;">openbabel</span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">rasmol</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"></span>
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<li id="7e0814b28d3f5e69d2bd207a602da432085564fe">
<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#7e0814b28d3f5e69d2bd207a602da432085564fe"><strong>tasks/dataacquisition</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,7 +27,7 @@ Suggests: rtai</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Suggests: xenomai-runtime</span>
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"><span class="idiff left right">#</span>Recommends: python-sardana</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Recommends: python<span class="idiff left right">3</span>-sardana</span>
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31
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Recommends: libgetdata-tools</span>
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#5c8afef60e7f1cfa16b5f8080b1dfb7b68f99b9f"><strong>tasks/imageanalysis-dev</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,7 @@ Recommends: libvisad-java</td>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Recommends: libvigraimpex-dev</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"><span class="idiff left right">#</span>Recommends: python-vigra</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Recommends: python<span class="idiff left right">3</span>-vigra</span>
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20
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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21
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Recommends: python3-imageio</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#dd0cd9dfe02c393c31d74ac359849d3f07a4568e"><strong>tasks/machine-learning</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,7 +76,7 @@ Why: OpenCV provides a set of ML methods for pattern recognition</td>
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"></span>
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">Recommends: libvigraimpex-dev</span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"></span>
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79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"><span class="idiff left right">#</span>Recommends: python-vigra</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">Recommends: python<span class="idiff left right">3</span>-vigra</span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext">Why: VIGRA is a computer vision library that provides customizable algorithms</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> and datastructures, allowing for easy adaptation in applications.</span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#4d9e31ac9545b642eb99b099d7e252c051f6a937"><strong>tasks/mathematics-dev</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,7 +221,7 @@ Recommends: libfeel++-dev</td>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext">Recommends: python3-pynfft</span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext">Suggests: python-numpy-groupies</span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext">Suggests: python<span class="idiff left right">3</span>-numpy-groupies</span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext">Recommends: libug-dev</span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#66a4404faa40243ac32eabbf24f246423e58b21d"><strong>tasks/meteorology</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -74,7 +74,7 @@ Recommends: ncl-ncarg</td>
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext">Recommends: harp</span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext">Recommends: python-cfgrib</span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">Recommends: python<span class="idiff left right">3</span>-cfgrib</span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"></span>
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext">Recommends: python3-cdo</span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#9b42befa2960d21a31d57a00f694ff1541d31ba3"><strong>tasks/neuroscience-cognitive</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,10 +42,11 @@ Why: Comprehensive MRI analysis suite.</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Recommends: fslview</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"><span class="idiff left right">#Recommend</span>s: python-mvpa2</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"><span class="idiff left right">Suggest</span>s: python-mvpa2</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">#Why: Framework for multivariate pattern analysis of neuroimaging datasets.</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"># No Python3 version</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"><span class="idiff left right">#</span>Recommends: python-nipy, python-nipype, python-nitime, python-dipy</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">Recommends: python<span class="idiff left">3</span>-nipy, python<span class="idiff">3</span>-nipype, python<span class="idiff">3</span>-nitime, python<span class="idiff right">3</span>-dipy</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">#Why: Python frameworks for analysis in neuroimaging</span>
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"></span>
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">Recommends: openwalnut-qt4</span>
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<li id="4d581ec816022db3ae6b026cc916edd38aebde55">
<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#4d581ec816022db3ae6b026cc916edd38aebde55"><strong>tasks/neuroscience-modeling</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +14,7 @@ Description: Debian Science packages for modeling of neural systems</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"><span class="n" style="color: #333;">Recommends</span><span class="p">:</span> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">brian</span></span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="mosel"><span class="p"><span class="idiff left right">#</span></span><span class="n" style="color: #333;">Suggests</span><span class="p">:</span> <span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">pynn</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"><span class="n" style="color: #333;">Suggests</span><span class="p">:</span> <span class="n" style="color: #333;">python<span class="idiff left right">3</span></span><span class="p">-</span><span class="n" style="color: #333;">pynn</span></span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"></span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"> <span class="p">;</span> <span class="n" style="color: #333;">Added</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">blends</span><span class="p">-</span><span class="n" style="color: #333;">inject</span> <span class="m" style="color: #099;">0.0.5</span><span class="p">.</span> <span class="p">[</span><span class="n" style="color: #333;">Please</span> <span class="n" style="color: #333;">note</span> <span class="n" style="color: #333;">here</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">modified</span> <span class="n" style="color: #333;">manually</span><span class="p">]</span></span>
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20
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">Suggests</span><span class="p">:</span> <span class="n" style="color: #333;">moose</span></span>
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<a href="https://salsa.debian.org/blends-team/science/-/commit/6d9a51b6eafa48b38edf0ef9673440f19e06bc55#a9f3d1c550be60641aa77dc5d8da919e83f084f3"><strong>tasks/numericalcomputation</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,7 +94,7 @@ Recommends: libdune-grid-dev</td>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext">Recommends: libcolpack-dev, libadolc-dev</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"><span class="idiff left right">#</span>Recommends: python-csa</span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">Recommends: python<span class="idiff left right">3</span>-csa</span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext">Recommends: algotutor</span>
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