[med-svn] r3464 - in trunk/packages/samtools/trunk: . debian

Thu Jun 4 06:36:00 UTC 2009

Author: plessy
Date: 2009-06-04 06:36:00 +0000 (Thu, 04 Jun 2009)
New Revision: 3464

Added:
   trunk/packages/samtools/trunk/debian/
   trunk/packages/samtools/trunk/debian/changelog
   trunk/packages/samtools/trunk/debian/compat
   trunk/packages/samtools/trunk/debian/control
   trunk/packages/samtools/trunk/debian/copyright
   trunk/packages/samtools/trunk/debian/docs
   trunk/packages/samtools/trunk/debian/install
   trunk/packages/samtools/trunk/debian/manpages
   trunk/packages/samtools/trunk/debian/rules
   trunk/packages/samtools/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications to trunk


Property changes on: trunk/packages/samtools/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
   + 1

Added: trunk/packages/samtools/trunk/debian/changelog
===================================================================

--- trunk/packages/samtools/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/changelog	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,7 @@
+samtools (0.1.3-1) UNRELEASED; urgency=low
+
+  Non-free files found; sort out before upload.
+
+  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 03 Feb 2009 13:46:43 +0900

Added: trunk/packages/samtools/trunk/debian/compat
===================================================================
--- trunk/packages/samtools/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/compat	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1 @@
+7

Added: trunk/packages/samtools/trunk/debian/control
===================================================================
--- trunk/packages/samtools/trunk/debian/control	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/control	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,20 @@
+Source: samtools
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 7), cdbs
+Standards-Version: 3.8.0
+Homepage: http://samtools.sourceforge.net
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/samtools/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/samtools/trunk/
+
+Package: samtools
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Processing sequence alignments in SAM format.
+ Samtools is a set of utilities that manipulate alignments in the BAM format.
+ It imports from and exports to the SAM (Sequence Alignment/Map) format, does
+ sorting, merging and indexing, and allows to retrieve reads in any regions
+ swiftly. 

Added: trunk/packages/samtools/trunk/debian/copyright
===================================================================
--- trunk/packages/samtools/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/copyright	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,30 @@
+
+./bgzf.c: * Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
+./bgzip.c: * Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
+
+Do not upload before sorting this out.
+
+Files: *
+Copyright: © 2008–2009, Genome Research Ltd.
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+
+Files: debian/*
+Copyright: © 2009, Charles Plessy <plessy at debian.org> and
+License: Same as SAMtools
+ See above.

Added: trunk/packages/samtools/trunk/debian/docs
===================================================================
--- trunk/packages/samtools/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/docs	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1 @@
+NEWS

Added: trunk/packages/samtools/trunk/debian/install
===================================================================
--- trunk/packages/samtools/trunk/debian/install	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/install	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,3 @@
+bgzip	usr/bin
+razip	usr/bin
+samtools	usr/bin

Added: trunk/packages/samtools/trunk/debian/manpages
===================================================================
--- trunk/packages/samtools/trunk/debian/manpages	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/manpages	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1 @@
+samtools.1

Added: trunk/packages/samtools/trunk/debian/rules
===================================================================
--- trunk/packages/samtools/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/rules	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,5 @@
+#!/usr/bin/make -f
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/makefile.mk
+


Property changes on: trunk/packages/samtools/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/samtools/trunk/debian/watch
===================================================================
--- trunk/packages/samtools/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/watch	2009-06-04 06:36:00 UTC (rev 3464)
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/samtools/samtools-([\d\.]*)\.tar\.bz2


