[med-svn] r4104 - trunk/packages/seqan/trunk/debian

[Soeren Sonnenburg]

Author: sonne
Date: 2009-09-30 22:50:43 +0000 (Wed, 30 Sep 2009)
New Revision: 4104

Added:
   trunk/packages/seqan/trunk/debian/seqan-apps.manpages
Modified:
   trunk/packages/seqan/trunk/debian/control
   trunk/packages/seqan/trunk/debian/dfi.1
   trunk/packages/seqan/trunk/debian/micro_razers.1
   trunk/packages/seqan/trunk/debian/pair_align.1
   trunk/packages/seqan/trunk/debian/razers.1
   trunk/packages/seqan/trunk/debian/seqan_tcoffee.1
   trunk/packages/seqan/trunk/debian/seqcons.1
   trunk/packages/seqan/trunk/debian/tree_recon.1
Log:
install manpages and fix synopsis

Modified: trunk/packages/seqan/trunk/debian/control
===================================================================
--- trunk/packages/seqan/trunk/debian/control	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/control	2009-09-30 22:50:43 UTC (rev 4104)
@@ -13,24 +13,26 @@
 Section: libdevel
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: A C++ template library for the analysis of sequences.
+Description: A C++ template library for the analysis of sequences
  SeqAn is a C++ template library of efficient algorithms and data
  structures for the analysis of sequences with the focus on
  biological data. This library applies a unique generic design that
  guarantees high performance, generality, extensibility, and
  integration with other libraries. SeqAn is easy to use and
  simplifies the development of new software tools with a minimal loss
- of performance.
+ of performance. This package contains the applications dfi, pair_align,
+ micro_razers, seqan_tcoffee, seqcons, razers and tree_recon.
 
 Package: seqan-dev
 Section: libdevel
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: A C++ template library for the analysis of sequences.
+Description: A C++ template library for the analysis of sequences
  SeqAn is a C++ template library of efficient algorithms and data
  structures for the analysis of sequences with the focus on
  biological data. This library applies a unique generic design that
  guarantees high performance, generality, extensibility, and
  integration with other libraries. SeqAn is easy to use and
  simplifies the development of new software tools with a minimal loss
- of performance.
+ of performance. This package contains the developer files, documentation
+ and examples.

Modified: trunk/packages/seqan/trunk/debian/dfi.1
===================================================================
--- trunk/packages/seqan/trunk/debian/dfi.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/dfi.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,6 +1,6 @@
 .TH DFI "1" "September 2009" "DFI version 2.0 20090715 [4670]" "User Commands"
 .SH NAME
-DFI \- manual page for DFI version 2.0 20090715 [4670]
+DFI \- The Deferred Frequency Index
 .SH SYNOPSIS
 .B dfi
 [\fIOPTION\fR]... \fI--minmax  <min_1> <max_1> <database 1> \fR... \fI--minmax <min_m> <max_m> <database m>\fR

Modified: trunk/packages/seqan/trunk/debian/micro_razers.1
===================================================================
--- trunk/packages/seqan/trunk/debian/micro_razers.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/micro_razers.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,6 +1,6 @@
 .TH MICRORAZERS "1" "September 2009" "MicroRazerS version 0.1 20090710 (prerelease)" "User Commands"
 .SH NAME
-MicroRazerS \- manual page for MicroRazerS version 0.1 20090710 (prerelease)
+MicroRazerS \- Rapid Alignment of Small RNA Reads
 .SH SYNOPSIS
 .B micro_razers
 [\fIOPTION\fR]... \fI<GENOME FILE> <READS FILE>\fR

Modified: trunk/packages/seqan/trunk/debian/pair_align.1
===================================================================
--- trunk/packages/seqan/trunk/debian/pair_align.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/pair_align.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,6 +1,6 @@
 .TH PAIRALIGN "1" "September 2009" "Version 1.0 (15. July 2009) Revision: 4566" "User Commands"
 .SH NAME
-pair_align \- manual page for pair_align 1.0 (15. July 2009) Revision: 4566
+pair_align \- Pairwise alignment
 .SH SYNOPSIS
 .B pair_align
 \fI-s <FASTA sequence file> \fR[\fIOptions\fR]

Modified: trunk/packages/seqan/trunk/debian/razers.1
===================================================================
--- trunk/packages/seqan/trunk/debian/razers.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/razers.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,7 +1,7 @@
 .\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.36.
 .TH RAZERS "1" "September 2009" "RazerS version 1.0 20090710 [4739]" "User Commands"
 .SH NAME
-RazerS \- manual page for RazerS version 1.0 20090710 [4739]
+RazerS \- Fast Read Mapping with Sensitivity Control
 .SH SYNOPSIS
 .B razers
 [\fIOPTION\fR]... \fI<GENOME FILE> <READS FILE>\fR

Added: trunk/packages/seqan/trunk/debian/seqan-apps.manpages
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-apps.manpages	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/seqan-apps.manpages	2009-09-30 22:50:43 UTC (rev 4104)
@@ -0,0 +1,7 @@
+debian/dfi.1
+debian/micro_razers.1
+debian/pair_align.1
+debian/razers.1
+debian/seqan_tcoffee.1
+debian/seqcons.1
+debian/tree_recon.1

Modified: trunk/packages/seqan/trunk/debian/seqan_tcoffee.1
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan_tcoffee.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/seqan_tcoffee.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,6 +1,6 @@
 .TH SEQAN_TCOFFEE "1" "September 2009" "Version 1.11 (30. July 2009) Revision: 4637" "User Commands"
 .SH NAME
-seqan_tcoffee \- manual page for Version 1.11 (30. July 2009) Revision: 4637
+seqan_tcoffee \- Multiple sequence alignment
 .SH SYNOPSIS
 .B seqan_tcoffee
 \fI-s <FASTA sequence file> \fR[\fIOptions\fR]

Modified: trunk/packages/seqan/trunk/debian/seqcons.1
===================================================================
--- trunk/packages/seqan/trunk/debian/seqcons.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/seqcons.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,6 +1,6 @@
 .TH SEQCONS "1" "September 2009" "Version 0.22 (06. August 2009) Revision: 4663" "User Commands"
 .SH NAME
-seqcons \- manual page for Version 0.22 (06. August 2009) Revision: 4663
+seqcons \- Multi\-read alignment
 .SH SYNOPSIS
 .B seqcons
 \fI-r <FASTA file with reads> \fR[\fIOptions\fR]

Modified: trunk/packages/seqan/trunk/debian/tree_recon.1
===================================================================
--- trunk/packages/seqan/trunk/debian/tree_recon.1	2009-09-30 22:30:13 UTC (rev 4103)
+++ trunk/packages/seqan/trunk/debian/tree_recon.1	2009-09-30 22:50:43 UTC (rev 4104)
@@ -1,7 +1,7 @@
 .\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.36.
 .TH VERSION "1" "September 2009" "Version 1.01 (18. August 2009) Revision: 4692" "User Commands"
 .SH NAME
-Version \- manual page for Version 1.01 (18. August 2009) Revision: 4692
+Version \- Tree reconstrucion
 .SH SYNOPSIS
 .B tree_recon
 \fI-m <Phylip distance matrix> \fR[\fIOptions\fR]