[med-svn] r5509 - trunk/packages/bowtie/trunk/debian

[Steffen Möller]

Author: moeller
Date: 2010-11-25 16:42:28 +0000 (Thu, 25 Nov 2010)
New Revision: 5509

Modified:
   trunk/packages/bowtie/trunk/debian/README.source
   trunk/packages/bowtie/trunk/debian/control
Log:
Even better now.


Modified: trunk/packages/bowtie/trunk/debian/README.source
===================================================================
--- trunk/packages/bowtie/trunk/debian/README.source	2010-11-25 16:31:22 UTC (rev 5508)
+++ trunk/packages/bowtie/trunk/debian/README.source	2010-11-25 16:42:28 UTC (rev 5509)
@@ -1,9 +1,12 @@
 bowtie for Debian
 -----------------
 
-<this file describes information about the source package, see Debian policy
-manual section 4.14. You WILL either need to modify or delete this file>
+The bowtie package seems to rely on version 1.1 of the seqan library,
+while Debian otherwise already features version 1.2. It yet remains
+to be investigated, to what degree the two might possibly be
+compatible.
 
+We did not dare any respective experiments and hope for a clarification
+by upstream on this issue - we just should not introduce any hidden
+mistakes here.
 
-
-

Modified: trunk/packages/bowtie/trunk/debian/control
===================================================================
--- trunk/packages/bowtie/trunk/debian/control	2010-11-25 16:31:22 UTC (rev 5508)
+++ trunk/packages/bowtie/trunk/debian/control	2010-11-25 16:42:28 UTC (rev 5509)
@@ -1,15 +1,25 @@
 Source: bowtie
-Section: unknown
+Section: science
 Priority: extra
 Maintainer: Steffen Moeller <moeller at debian.org>
+Uploaders: Yask Gupta <yask.gupta87 at gmail.com>
 Build-Depends: debhelper (>= 7.0.50~)
-Standards-Version: 3.8.4
-Homepage: <insert the upstream URL, if relevant>
-#Vcs-Git: git://git.debian.org/collab-maint/bowtie.git
-#Vcs-Browser: http://git.debian.org/?p=collab-maint/bowtie.git;a=summary
+Standards-Version: 3.9.1
+Homepage: http://bowtie-bio.sourceforge.net/
+Vcs-Svn: svn+ssh://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bowtie/trunk/
 
 Package: bowtie
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: <insert up to 60 chars description>
- <insert long description, indented with spaces>
+Description: ultrafast memory-efficient short read aligner
+ This package addresses the problem to interpret the results from the
+ latest (2010) DNA sequencing technologies. Those will yield fairly
+ short stretches and those cannot be interpreted directly. It is the
+ challenge for tools like Bowtie to give a chromosomal location to the
+ short stretches of DNA sequenced per run.
+ .
+ Bowtie aligns short DNA sequences (reads) to the human genome at a rate
+ of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
+ a Burrows-Wheeler index to keep its memory footprint small: typically
+ about 2.2 GB for the human genome (2.9 GB for paired-end).