[med-svn] [SCM] samtools branch, lucid-ppa, updated. debian/0.1.17-1-3-ge1b43b0

[Charles Plessy]

The following commit has been merged in the lucid-ppa branch:
commit aa03bbcbdacb4bd2e2cf760ad78ef9012151a0a2
Merge: 829f90c95a3a55434380eed1078d5460f9b829ea 5075acdfc387c56ca8411cde3e419e867da9804d
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Jul 11 21:24:47 2011 +0900

    Merge branch 'master' into lucid-ppa
    
    Conflicts:
    	debian/changelog

diff --combined debian/changelog
index 7da5cb5,385908a..8908d98
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,11 -1,13 +1,21 @@@
+ samtools (0.1.17-1) unstable; urgency=low
+ 
+   * New upstream release 0.1.17 (6 July, 2011).
+   * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
+   * Patched the example makefile to not use samtools pileup, deprecated.
+     (debian/control, debian/rules, debian/patches/series,
+     debian/patches/no-pileup-tests.patch)
+ 
+  -- Charles Plessy <plessy at debian.org>  Mon, 11 Jul 2011 21:04:30 +0900
+ 
 +samtools (0.1.16-1~lucid1) lucid; urgency=low
 +
 +  * 0.1.16-1 built for Lucid on Debian Med's PPA, after reverting the move
 +    of the headers to /usr/include/samtools, in order to not break the
 +    buildability of libbio-samtools-perl from Lucid.
 +
 + -- Charles Plessy <plessy at debian.org>  Fri, 20 May 2011 18:55:31 +0900
 +
  samtools (0.1.16-1) unstable; urgency=low
  
    * New upstream release, implementing SAM Spec v1.4.

-- 
Processing of sequence alignments in SAM and BAM formats.