[med-svn] r11639 - in trunk/packages/predictNLS: . build-area tarballs trunk trunk/debian
Julia Ertl
julia-guest at alioth.debian.org
Sun Jul 8 13:48:34 UTC 2012
Author: julia-guest
Date: 2012-07-08 13:48:34 +0000 (Sun, 08 Jul 2012)
New Revision: 11639
Added:
trunk/packages/predictNLS/build-area/
trunk/packages/predictNLS/tarballs/
trunk/packages/predictNLS/trunk/debian/
trunk/packages/predictNLS/trunk/debian/changelog
trunk/packages/predictNLS/trunk/debian/compat
trunk/packages/predictNLS/trunk/debian/control
trunk/packages/predictNLS/trunk/debian/copyright
trunk/packages/predictNLS/trunk/debian/rules
Log:
first commit
Property changes on: trunk/packages/predictNLS/build-area
___________________________________________________________________
Added: svn:ignore
+ *
Property changes on: trunk/packages/predictNLS/tarballs
___________________________________________________________________
Added: svn:ignore
+ *
Added: trunk/packages/predictNLS/trunk/debian/changelog
===================================================================
--- trunk/packages/predictNLS/trunk/debian/changelog (rev 0)
+++ trunk/packages/predictNLS/trunk/debian/changelog 2012-07-08 13:48:34 UTC (rev 11639)
@@ -0,0 +1,123 @@
+predictnls (1.0.18) unstable; urgency=low
+
+ * fixed warnings for test sequences MNKIPIKDLLNPGAA and MNKIPIKDLLNPG
+ * bug 39 (PredictNLS misses any NLS right at start of the protein) fixed
+ * fixed bug 37, 38, 40: LICENSE file missing; PredictNLS start positions
+ off by one (using zero based counting); predictNLS only reports last
+ match for any one NLS motif
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 03 Jun 2011 19:00:02 +0200
+
+predictnls (1.0.17) unstable; urgency=low
+
+ * better error reporting around line 301
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Sun, 17 Apr 2011 13:29:38 +0200
+
+predictnls (1.0.16) unstable; urgency=low
+
+ * bugzilla url
+ * popularity contest
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 18 Feb 2011 17:57:00 +0100
+
+predictnls (1.0.15) stable; urgency=low
+
+ * Changed references to online help
+
+ -- Guy Yachdav <gyachdav at rostlab.org> Thu, 04 Nov 2010 20:33:24 +0100
+
+predictnls (1.0.14) stable; urgency=low
+
+ * fixed perl warning
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 13 Oct 2010 13:09:22 +0200
+
+predictnls (1.0.13) stable; urgency=low
+
+ * fixed deletion of output file bug
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 13 Oct 2010 13:05:47 +0200
+
+predictnls (1.0.12) stable; urgency=low
+
+ * added nlsdat option to extract non-html nls prediction along with the html
+ * fixed html report table
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 13 Oct 2010 12:35:26 +0200
+
+predictnls (1.0.11) stable; urgency=low
+
+ * Fixed temporary dir missing '/' bug
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Sat, 25 Sep 2010 23:04:53 +0200
+
+predictnls (1.0.10)
+
+ * Fixed make file
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 18 Aug 2010 12:18:07 +0200
+
+predictnls (1.0.9)
+
+ * Implemented check for one-sequence fasta input - as expected by program
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 18 Aug 2010 12:06:23 +0200
+
+predictnls (1.0.8)
+
+ * New README - now with content
+ * New options: --version, --help, uses Pod::Usage
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 18 Aug 2010 11:51:16 +0200
+
+predictnls (1.0.7)
+
+ * New data files from Rajesh's predictNLS-v1.3.tgz: ExptNls.rdb is better formatted an extended, My_NLS_list is extended
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 16 Aug 2010 18:06:04 +0200
+
+predictnls (1.0.6)
+
+ * Summary file param now takes path, so does trace
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 22 Jul 2010 23:10:11 +0200
+
+predictnls (1.0.5)
+
+ * Summary file correctly documented and operates
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 22 Jul 2010 23:10:11 +0200
+
+predictnls (1.0.4)
+
+ * html option now defaults to 0
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 23 Jun 2010 17:13:00 +0200
+
+predictnls (1.0.3)
+
+ * New license: GPL now.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Tue, 09 Mar 2010 11:23:17 +0100
+
+predictnls (1.0.2)
+
+ * example in html format
+ * fixed unint var warnings
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 08 Mar 2010 14:37:57 +0100
+
+predictnls (1.0.1)
+
+ * upgrade to version from loctree
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Sun, 28 Feb 2010 23:46:29 +0100
+
+predictnls (1.0.0)
+
+ * Initial packaged version
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 18 Feb 2010 15:11:38 +0100
+
+
Added: trunk/packages/predictNLS/trunk/debian/compat
===================================================================
--- trunk/packages/predictNLS/trunk/debian/compat (rev 0)
+++ trunk/packages/predictNLS/trunk/debian/compat 2012-07-08 13:48:34 UTC (rev 11639)
@@ -0,0 +1 @@
+7
Added: trunk/packages/predictNLS/trunk/debian/control
===================================================================
--- trunk/packages/predictNLS/trunk/debian/control (rev 0)
+++ trunk/packages/predictNLS/trunk/debian/control 2012-07-08 13:48:34 UTC (rev 11639)
@@ -0,0 +1,14 @@
+Source: predictnls
+Section: science
+Priority: extra
+Maintainer: Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: debhelper (>= 7), autotools-dev
+Standards-Version: 3.9.1
+Homepage: http://www.rostlab.org/services/predictNLS/
+
+Package: predictnls
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, perl
+Recommends: pp-popularity-contest
+Description: prediction and analysis of nuclear localization signals
+ PredictNLS predicts if your protein is nuclear. If no NLS is found you can predict the subcellular localization of the protein using loctree.
Added: trunk/packages/predictNLS/trunk/debian/copyright
===================================================================
--- trunk/packages/predictNLS/trunk/debian/copyright (rev 0)
+++ trunk/packages/predictNLS/trunk/debian/copyright 2012-07-08 13:48:34 UTC (rev 11639)
@@ -0,0 +1,29 @@
+This package was debianized by Laszlo Kajan <lkajan at rostlab.org> on
+Fri, 19 Feb 2010 15:45:28 +0100
+
+Upstream Author:
+
+ R. Nair
+
+Copyright:
+
+ Copyright © 2010 R. Nair
+
+License:
+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+The Debian packaging is (C) 2009, Laszlo Kajan <lkajan at rostlab.org> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
Added: trunk/packages/predictNLS/trunk/debian/rules
===================================================================
--- trunk/packages/predictNLS/trunk/debian/rules (rev 0)
+++ trunk/packages/predictNLS/trunk/debian/rules 2012-07-08 13:48:34 UTC (rev 11639)
@@ -0,0 +1,105 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE))
+CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
+else
+CROSS= --build $(DEB_BUILD_GNU_TYPE)
+endif
+
+
+
+config.status: configure
+ dh_testdir
+ # Add here commands to configure the package.
+ifneq "$(wildcard /usr/share/misc/config.sub)" ""
+ cp -f /usr/share/misc/config.sub config.sub
+endif
+ifneq "$(wildcard /usr/share/misc/config.guess)" ""
+ cp -f /usr/share/misc/config.guess config.guess
+endif
+ ./configure $(CROSS) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --sysconfdir=/etc CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs"
+
+
+build: build-stamp
+
+build-stamp: config.status
+ dh_testdir
+
+ # Add here commands to compile the package.
+ $(MAKE)
+ #docbook-to-man debian/predictnls.sgml > predictnls.1
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+
+ # Add here commands to clean up after the build process.
+ [ ! -f Makefile ] || $(MAKE) distclean
+ rm -f config.sub config.guess
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_prep
+ dh_installdirs
+
+ # Add here commands to install the package into debian/predictnls.
+ $(MAKE) DESTDIR=$(CURDIR)/debian/predictnls install
+
+
+# Build architecture-independent files here.
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_python
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms --exclude grep_NLS_update.pl
+# dh_perl
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+# Build architecture-dependent files here.
+binary-arch: build install
+# We have nothing to do by default.
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/predictNLS/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
More information about the debian-med-commit
mailing list