[med-svn] r11649 - in trunk/packages/genometools/trunk/debian: . patches

[Sascha Steinbiss]

Author: sascha-guest
Date: 2012-07-09 12:35:27 +0000 (Mon, 09 Jul 2012)
New Revision: 11649

Modified:
   trunk/packages/genometools/trunk/debian/changelog
   trunk/packages/genometools/trunk/debian/patches/adding_soname
   trunk/packages/genometools/trunk/debian/patches/libbam-fix
Log:
update to 1.4.1


Modified: trunk/packages/genometools/trunk/debian/changelog
===================================================================
--- trunk/packages/genometools/trunk/debian/changelog	2012-07-09 11:40:22 UTC (rev 11648)
+++ trunk/packages/genometools/trunk/debian/changelog	2012-07-09 12:35:27 UTC (rev 11649)
@@ -1,3 +1,11 @@
+genometools (1.4.1-1) unstable; urgency=low
+
+  * New upstream release (1.4.1)
+  * the GFF3 parser now handles children which are defined before their parents
+  * many small improvements to the GFF3 parser
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de>  Mon, 09 Jul 2012 14:10:23 +0100
+
 genometools (1.4.0-1) unstable; urgency=low
 
   * Initial release (Closes: #657923)

Modified: trunk/packages/genometools/trunk/debian/patches/adding_soname
===================================================================
--- trunk/packages/genometools/trunk/debian/patches/adding_soname	2012-07-09 11:40:22 UTC (rev 11648)
+++ trunk/packages/genometools/trunk/debian/patches/adding_soname	2012-07-09 12:35:27 UTC (rev 11649)
@@ -1,16 +1,14 @@
-Index: genometools-1.4.0/Makefile
-===================================================================
---- genometools-1.4.0.orig/Makefile	2012-03-26 16:46:06.000000000 +0200
-+++ genometools-1.4.0/Makefile	2012-03-26 16:47:21.000000000 +0200
-@@ -78,6 +78,7 @@
+--- genometools-1.4.1.orig/Makefile
++++ genometools-1.4.1/Makefile
+@@ -77,6 +77,7 @@
    SHARED_OBJ_NAME_EXT:=.so
    SHARED:=-shared
  endif
 +SONAME_VERSION:=.0
  
  # libraries for which we build replacements (that also appear in dependencies)
- OVERRIDELIBS:=-lbz2 -lz
-@@ -233,7 +234,7 @@
+ EXP_LDLIBS+=-lz -lbz2
+@@ -235,7 +236,7 @@
  
  # add necessary shared lib dependencies then not building them ourselves
  ifeq ($(useshared),yes)
@@ -19,7 +17,7 @@
             -llua5.1-filesystem -llua5.1-des56 -lbam
    EXP_LDLIBS += $(DEPLIBS)
    GTSHAREDLIB_LIBDEP += $(DEPLIBS)
-@@ -573,8 +574,8 @@
+@@ -538,8 +539,8 @@
                                            $(ADDITIONAL_SO_DEPS)
  	@echo "[link $(@F)]"
  	@test -d $(@D) || mkdir -p $(@D)
@@ -30,7 +28,7 @@
  
  lib/libtecla.a: $(LIBTECLA_OBJ)
  	@echo "[link $(@F)]"
-@@ -918,7 +919,8 @@
+@@ -872,7 +873,8 @@
  ifdef RANLIB
  	$(RANLIB) $(prefix)/lib/libgenometools.a
  endif

Modified: trunk/packages/genometools/trunk/debian/patches/libbam-fix
===================================================================
--- trunk/packages/genometools/trunk/debian/patches/libbam-fix	2012-07-09 11:40:22 UTC (rev 11648)
+++ trunk/packages/genometools/trunk/debian/patches/libbam-fix	2012-07-09 12:35:27 UTC (rev 11649)
@@ -1,6 +1,6 @@
---- genometools-1.4.0.orig/Makefile
-+++ genometools-1.4.0/Makefile
-@@ -235,7 +235,7 @@
+--- genometools-1.4.1.orig/Makefile
++++ genometools-1.4.1/Makefile
+@@ -237,7 +237,7 @@
  # add necessary shared lib dependencies then not building them ourselves
  ifeq ($(useshared),yes)
    DEPLIBS:=-lm -lbz2 -lz -lexpat -llua5.1-lpeg -llua5.1 -llua5.1-md5  \
@@ -9,7 +9,7 @@
    EXP_LDLIBS += $(DEPLIBS)
    GTSHAREDLIB_LIBDEP += $(DEPLIBS)
  endif
-@@ -555,6 +555,10 @@
+@@ -520,6 +520,10 @@
  	@$(RANLIB) $@
  endif
  
@@ -20,7 +20,7 @@
  lib/libgenometools.a: obj/gt_config.h  $(LIBGENOMETOOLS_OBJ)
  	@echo "[link $(@F)]"
  	@test -d $(@D) || mkdir -p $(@D)
-@@ -563,19 +567,13 @@
+@@ -528,19 +532,13 @@
  	@$(RANLIB) $@
  endif
  
@@ -42,7 +42,7 @@
  
  lib/libtecla.a: $(LIBTECLA_OBJ)
  	@echo "[link $(@F)]"
-@@ -603,48 +601,62 @@
+@@ -568,48 +566,62 @@
  
  $(eval $(call PROGRAM_template, bin/skproto, $(SKPROTO_OBJ) \
                                               lib/libgenometools.a\