[med-svn] r11667 - in trunk/packages/rostlab/profisis: . trunk trunk/debian trunk/debian/source
Cedric Staniewski
cst-guest at alioth.debian.org
Mon Jul 9 18:45:39 UTC 2012
Author: cst-guest
Date: 2012-07-09 18:45:39 +0000 (Mon, 09 Jul 2012)
New Revision: 11667
Added:
trunk/packages/rostlab/profisis/trunk/debian/
trunk/packages/rostlab/profisis/trunk/debian/changelog
trunk/packages/rostlab/profisis/trunk/debian/compat
trunk/packages/rostlab/profisis/trunk/debian/control
trunk/packages/rostlab/profisis/trunk/debian/copyright
trunk/packages/rostlab/profisis/trunk/debian/files
trunk/packages/rostlab/profisis/trunk/debian/rules
trunk/packages/rostlab/profisis/trunk/debian/source/
trunk/packages/rostlab/profisis/trunk/debian/source/format
trunk/packages/rostlab/profisis/trunk/debian/upstream
trunk/packages/rostlab/profisis/trunk/debian/watch
Modified:
trunk/packages/rostlab/profisis/
Log:
profisis: initial commit
Property changes on: trunk/packages/rostlab/profisis
___________________________________________________________________
Added: svn:ignore
+ build-area
tarballs
Property changes on: trunk/packages/rostlab/profisis/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rostlab/profisis/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/changelog (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/changelog 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,46 @@
+profisis (1.0.6-1) unstable; urgency=low
+
+ * Initial release (Closes: #680106)
+
+ -- Cedric Staniewski <cedric at gmx.ca> Mon, 09 Jul 2012 20:22:37 +0200
+
+profisis (1.0.5) stable; urgency=low
+
+ * warn if pp-popcon is not installed
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 28 Feb 2011 18:17:50 +0100
+
+profisis (1.0.4) stable; urgency=low
+
+ * Debian native now
+ * bugzilla url
+ * popularity contest
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 18 Feb 2011 22:35:59 +0100
+
+profisis (1.0.3)
+
+ * profrdb -> rdbProf for consistency - second attempt
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 07 May 2010 14:09:13 +0200
+
+profisis (1.0.2)
+
+ * Corrected man page environment variable
+ * profrdb -> rdbprof for consistency
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 07 May 2010 14:09:13 +0200
+
+profisis (1.0.1)
+
+ * Updated manpage with example and other sections
+ * Examples are now installed
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Sat, 24 Apr 2010 20:30:53 +0200
+
+profisis (1.0.0)
+
+ * Initial packaged version
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Sat, 24 Apr 2010 20:30:53 +0200
+
Added: trunk/packages/rostlab/profisis/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/compat (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/compat 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1 @@
+8
Added: trunk/packages/rostlab/profisis/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/control (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/control 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,24 @@
+Source: profisis
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.2
+Homepage: http://www.predictprotein.org/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profisis/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/profisis/trunk/
+
+Package: profisis
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, libconfig-inifiles-perl, profnet-isis
+Recommends: librg-utils-perl, pp-popularity-contest
+Description: protein-protein interaction sites identified from sequence
+ Profisis (ISIS) is a machine learning-based method that identifies interacting
+ residues from sequence alone. Although the method is developed using transient
+ protein–protein interfaces from complexes of experimentally known 3D
+ structures, it never explicitly uses 3D information. Instead, predicted
+ structural features are combined with evolutionary information. The strongest
+ predictions of the method reached over 90% accuracy in a cross-validation
+ experiment. The results suggest that despite the significant diversity in the
+ nature of protein–protein interactions, they all share common basic principles
+ and that these principles are identifiable from sequence alone.
Added: trunk/packages/rostlab/profisis/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/copyright (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/copyright 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,29 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: profisis
+Source: http://www.predictprotein.org/
+
+Files: *
+Copyright: 2006 Yanay Ofran
+ 2006 Burkhard Rost
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2012 Cedric Staniewski <cedric at gmx.ca>
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
Added: trunk/packages/rostlab/profisis/trunk/debian/files
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/files (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/files 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1 @@
+profisis_1.0.6-1_all.deb science optional
Added: trunk/packages/rostlab/profisis/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/rules (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/rules 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,8 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
Property changes on: trunk/packages/rostlab/profisis/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rostlab/profisis/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/source/format (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/source/format 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rostlab/profisis/trunk/debian/upstream
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/upstream (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/upstream 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,15 @@
+Bug-Database: https://rostlab.org/bugzilla3/buglist.cgi?product=profisis&component=profisis&resolution=---
+Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=profisis
+Reference:
+ Author: Yanay Ofran and Burkhard Rost
+ Title: ISIS: interaction sites identified from sequence
+ Journal: Bioinformatics
+ Year: 2007
+ Volume: 23
+ Number: 2
+ Pages: e13-e16
+ DOI: 10.1093/bioinformatics/btl303
+ PMID: 17237081
+ Type: article
+ URL: http://bioinformatics.oxfordjournals.org/content/23/2/e13.abstract
+ Eprint: http://bioinformatics.oxfordjournals.org/content/23/2/e13.full.pdf+html
Added: trunk/packages/rostlab/profisis/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/profisis/trunk/debian/watch (rev 0)
+++ trunk/packages/rostlab/profisis/trunk/debian/watch 2012-07-09 18:45:39 UTC (rev 11667)
@@ -0,0 +1,3 @@
+# watch control file for uscan
+version=3
+ftp://rostlab.org/free/profisis-([0-9.]+)\.tar\.gz debian uupdate
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