[med-svn] [r-bioc-cummerbund] branch upstream updated (185e6e7 -> efe7e1b)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-cummerbund.

      from  185e6e7   Imported Upstream version 2.8.0
       new  efe7e1b   Imported Upstream version 2.10.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                              |  10 +-
 R/database-setup.R                       | 491 ++++++++++++++++---------------
 build/vignette.rds                       | Bin 303 -> 302 bytes
 inst/NEWS                                |  95 +++---
 inst/doc/cummeRbund-example-workflow.pdf | Bin 198287 -> 198279 bytes
 inst/doc/cummeRbund-manual.R             |  16 +-
 inst/doc/cummeRbund-manual.Rnw           | 220 +++++++-------
 inst/doc/cummeRbund-manual.pdf           | Bin 1563970 -> 1563785 bytes
 inst/extdata/.RData                      | Bin 3317 -> 0 bytes
 inst/reports/runReport.Rnw               |  86 ------
 vignettes/cummeRbund-manual.Rnw          | 220 +++++++-------
 11 files changed, 544 insertions(+), 594 deletions(-)
 delete mode 100644 inst/extdata/.RData
 delete mode 100644 inst/reports/runReport.Rnw

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