Author: tille
Date: 2015-10-31 20:06:48 +0000 (Sat, 31 Oct 2015)
New Revision: 20369
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
Log:
Add SummarizedExperiment
Modified: trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa 2015-10-31 19:59:15 UTC (rev 20368)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa 2015-10-31 20:06:48 UTC (rev 20369)
@@ -31,36 +31,36 @@
| | makecdfenv | | +-----------+ | +----------+--------+
| +------------+ | +----------------------->| shortread |<-------|---------------+ genomicalignments |
| ^ | | +-----------+ | +-------------------+
- | | | | | ^
- | | | | | |
- | | | | | +-----------+--+
- | | +----------------+ +---------------------------------->| rsamtools |
- | | | | | | +--------------+
-+------+-----+ +-------+--+ | +--+-----+---+ +------------+ +------+--+ ^ ^:
-| hypergraph | | affy |<-----------+ | | biostrings | | annotate | | biomart | | |:
-+------------+ +----------+ | | +------------+ +------------+ +---------+ | |:
- ^ ^ ^ ^ | | ^ ^ ^ | |:
- | | | | | | | | | | |:
- +---+---+ +----------------+ | ++--------+ | | | +--+----------+-+ +--------+------+ |:
- | graph | | preprocesscore | | | affyio | | | | | annotationdbi | | genomicranges | |:
- +-------+ +----------------+ | +---------+ | | | +---------------+ +---------------+ |:
- ^ | | | | ^ ^ ^ ^ |:
- | | | | | | | | | |:
- | +--------+------+ | | +---------|-----------------+ | | | |:
- | | biocinstaller | | | | | | | | |:
- | +---------------+ | | | | +----------------------|--------+ | |:
- | | | | | | | | |:
- | | | | +---+---+-+ +-+-----------++ |:
- | | | | | xvector | | genomeinfodb | |:
- | | | | +---------+ +--------------+ |:
- | | | | ^ ^ |:
- | | | | | | |:
- | +----------+ | | | +---+-----+ | |:
- | | multtest | | | | | iranges +-------------------------+ |:
- | +----------+ | | | +-------+-+ |:
- | ^ | | | ^ : |:
- | | +-+--+--+-+ | : |:
- | +--------------+ biobase | | : |:
+ | | | | | ^ ^
+ | | | | | | |
+ | | | | | +-----------+--+ +--------+-------------+
+ | | +----------------+ +---------------------------------->| rsamtools | | summarizedexperiment |
+ | | | | | | +--------------+ +----------------------+
++------+-----+ +-------+--+ | +--+-----+---+ +------------+ +------+--+ ^ ^: ^
+| hypergraph | | affy |<-----------+ | | biostrings | | annotate | | biomart | | |: |
++------------+ +----------+ | | +------------+ +------------+ +---------+ | |: |
+ ^ ^ ^ ^ | | ^ ^ ^ | |: |
+ | | | | | | | | | | |: |
+ +---+---+ +----------------+ | ++--------+ | | | +--+----------+-+ +--------+------+ |: |
+ | graph | | preprocesscore | | | affyio | | | | | annotationdbi | | genomicranges | |: |
+ +-------+ +----------------+ | +---------+ | | | +---------------+ +---------------+ |: |
+ ^ | | | | ^ ^ ^ ^ |: |
+ | | | | | | | | | |: |
+ | +--------+------+ | | +---------|-----------------+ | | | |: |
+ | | biocinstaller | | | | | | | | |: |
+ | +---------------+ | | | | +----------------------|--------+ | |: |
+ | | | | | | | | |: |
+ | | | | +---+---+-+ +-+-----------++ |: |
+ | | | | | xvector | | genomeinfodb | |: |
+ | | | | +---------+ +--------------+ |: |
+ | | | | ^ ^ |: |
+ | | | | | | |: |
+ | +----------+ | | | +---+-----+ | |: |
+ | | multtest | | | | | iranges +-------------------------+ |: |
+ | +----------+ | | | +-------+-+ |: |
+ | ^ | | | ^ : |: |
+ | | +-+--+--+-+ | : |: |
+ | +--------------+ biobase +-----------|-:---------------------------------------------|:-----------+
| +---------+ | v |v
| ^ +--+--------+ +---------+----+
| | +---------->| s4vectors | | biocparallel |