[med-svn] [mia] 01/07: unapply patches

[Gert Wollny]

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gert-guest pushed a commit to branch master
in repository mia.

commit 111b8f99fc6753af338849e0aa227606500c77e5
Author: Gert Wollny <gw.fossdev at gmail.com>
Date:   Mon Apr 25 10:07:50 2016 +0000

    unapply patches
---
 mia/2d/filter/thresh.cc   | 6 +++---
 mia/template/watershed.hh | 2 +-
 src/2dgroundtruthreg.cc   | 2 +-
 src/2dmyoicapgt.cc        | 2 +-
 src/2dmyopgt-nonrigid.cc  | 2 +-
 5 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/mia/2d/filter/thresh.cc b/mia/2d/filter/thresh.cc
index ef54480..1425b70 100644
--- a/mia/2d/filter/thresh.cc
+++ b/mia/2d/filter/thresh.cc
@@ -70,7 +70,7 @@ C2DThreshNImageFilterFactory::C2DThreshNImageFilterFactory():
 	m_thresh(5.0)
 {
 	add_parameter("shape", make_param(m_shape, "4n", false, "neighborhood shape to take into account")); 
-	add_parameter("thresh", make_param(m_thresh, false, "The threshold value"));
+	add_parameter("thresh", make_param(m_thresh, false, "The threshhold value"));
 }
 
 C2DFilter *C2DThreshNImageFilterFactory::do_create()const
@@ -80,8 +80,8 @@ C2DFilter *C2DThreshNImageFilterFactory::do_create()const
 
 const std::string C2DThreshNImageFilterFactory::do_get_descr() const
 {
-	return  "This filter sets all pixels of an image to zero that fall below a certain threshold and "
-		"whose neighbours in a given neighborhood shape also fall below a this threshold"; 
+	return  "This filter sets all pixels of an image to zero that fall below a certain threshhold and "
+		"whose neighbours in a given neighborhood shape also fall below a this threshhold"; 
 }
 
 extern "C" EXPORT CPluginBase *get_plugin_interface()
diff --git a/mia/template/watershed.hh b/mia/template/watershed.hh
index 0d2f9f2..6fbdbce 100644
--- a/mia/template/watershed.hh
+++ b/mia/template/watershed.hh
@@ -323,7 +323,7 @@ TWatershedFilterPlugin<dim>::TWatershedFilterPlugin():
 	this->add_parameter("n", make_param(m_neighborhood, "sphere:r=1", false, "Neighborhood for watershead region growing")); 
 	this->add_parameter("mark", new mia::CBoolParameter(m_with_borders, false, "Mark the segmented watersheds with a special gray scale value")); 
 	this->add_parameter("thresh", make_coi_param(m_thresh, 0, 1.0, false, "Relative gradient norm threshold. The actual value "
-						     "threshold value is thresh * (max_grad - min_grad) + min_grad. Bassins "
+						     "threshhold value is thresh * (max_grad - min_grad) + min_grad. Bassins "
 						     "separated by gradients with a lower norm will be joined"));  
 	this->add_parameter("evalgrad", new mia::CBoolParameter(m_eval_grad, false, "Set to 1 if the input image does "
 								"not represent a gradient norm image")); 
diff --git a/src/2dgroundtruthreg.cc b/src/2dgroundtruthreg.cc
index f8b844f..55462eb 100644
--- a/src/2dgroundtruthreg.cc
+++ b/src/2dgroundtruthreg.cc
@@ -166,7 +166,7 @@ int do_main( int argc, char *argv[] )
 	options.add(make_opt( pgt_params.beta, "beta", 'B', "temporal second derivative penalty weight", 
 				    CCmdOptionFlags::required));
 	options.add(make_opt( pgt_params.rho_thresh, "rho_thresh", 'R', 
-				    "correlation threshold for neighborhood analysis", CCmdOptionFlags::required));
+				    "crorrelation threshhold for neighborhood analysis", CCmdOptionFlags::required));
 
 
 	
diff --git a/src/2dmyoicapgt.cc b/src/2dmyoicapgt.cc
index a52aa2e..56aadec 100644
--- a/src/2dmyoicapgt.cc
+++ b/src/2dmyoicapgt.cc
@@ -480,7 +480,7 @@ int do_main( int argc, char *argv[] )
 	options.add(make_opt( pgt_alpha, "alpha", 'A', "spacial neighborhood penalty weight"));
 	options.add(make_opt( pgt_beta, "beta", 'B', "temporal second derivative penalty weight"));
 	options.add(make_opt( pgt_rho_thresh, "rho-thresh", 'T', 
-				    "correlation threshold for neighborhood analysis"));
+				    "crorrelation threshhold for neighborhood analysis"));
 
 	
 		
diff --git a/src/2dmyopgt-nonrigid.cc b/src/2dmyopgt-nonrigid.cc
index 8784d59..ab47cc2 100644
--- a/src/2dmyopgt-nonrigid.cc
+++ b/src/2dmyopgt-nonrigid.cc
@@ -147,7 +147,7 @@ int do_main( int argc, char *argv[] )
 	options.add(make_opt( alpha, "alpha", 'A', "spacial neighborhood penalty weight"));
 	options.add(make_opt( beta, "beta", 'B', "temporal second derivative penalty weight"));
 	options.add(make_opt( rho_thresh, "rho-thresh", 'R', 
-				    "correlation threshold for neighborhood analysis"));
+				    "crorrelation threshhold for neighborhood analysis"));
 	options.add(make_opt( skip_images, "skip", 'k', "skip images at the beginning of the series "
 				    "e.g. because as they are of other modalities")); 
 	

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