[med-svn] [ngs-sdk] 14/15: remove ngs-bam generation

[Olivier Sallou]

This is an automated email from the git hooks/post-receive script.

osallou pushed a commit to branch master
in repository ngs-sdk.

commit 9b905666b913a0f1659c3fbc9f1bb5cf01d06396
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Tue Jan 5 10:04:07 2016 +0100

    remove ngs-bam generation
---
 debian/rules | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/debian/rules b/debian/rules
index 33dfd8c..2b920aa 100755
--- a/debian/rules
+++ b/debian/rules
@@ -46,11 +46,16 @@ override_dh_auto_configure:
 	# ./configure --prefix=/usr --javadir=/usr/share/java
 	# dh_auto_configure --sourcedirectory=ngs-sdk
 	# # that's no standard configure script lacking support of default options \
-	./configure --build=$(BUILDTYPE) --prefix=/usr ; \
+	./configure --build=$(BUILDTYPE) --prefix=/usr ;
 
 override_dh_auto_build:
 	#dh_auto_build --sourcedirectory=$(DEBPKGNAME)
-	dh_auto_build
+	dh_auto_build --sourcedirectory=$(DEBPKGNAME)
+	# Remove ngs-bam generation, expects ngs-sdk and cannot find a way
+	# to specify it
+	#cd ngs-bam && LD_LIBRARY_PATH=../$(SODIR)/rel/lib ./configure --build=$(BUILDTYPE) --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk
+	#dh_auto_build --sourcedirectory=ngs-bam
+	dh_auto_build --sourcedirectory=ngs-java
 	markdown_py -f README.html README.md
 
 override_dh_auto_test:

-- 
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