[med-svn] r21543 - in trunk/packages/R: . r-cran-rncl r-cran-rncl/trunk r-cran-rncl/trunk/debian r-cran-rncl/trunk/debian/source

Tue Mar 22 13:19:47 UTC 2016

Author: tille
Date: 2016-03-22 13:19:46 +0000 (Tue, 22 Mar 2016)
New Revision: 21543

Added:
   trunk/packages/R/r-cran-rncl/
   trunk/packages/R/r-cran-rncl/trunk/
   trunk/packages/R/r-cran-rncl/trunk/debian/
   trunk/packages/R/r-cran-rncl/trunk/debian/changelog
   trunk/packages/R/r-cran-rncl/trunk/debian/compat
   trunk/packages/R/r-cran-rncl/trunk/debian/control
   trunk/packages/R/r-cran-rncl/trunk/debian/copyright
   trunk/packages/R/r-cran-rncl/trunk/debian/rules
   trunk/packages/R/r-cran-rncl/trunk/debian/source/
   trunk/packages/R/r-cran-rncl/trunk/debian/source/format
   trunk/packages/R/r-cran-rncl/trunk/debian/watch
Log:
Initial packaging for r-cran-rncl


Added: trunk/packages/R/r-cran-rncl/trunk/debian/changelog
===================================================================

--- trunk/packages/R/r-cran-rncl/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/changelog	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1,5 @@
+r-cran-rncl (0.6.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 12:05:59 +0100

Added: trunk/packages/R/r-cran-rncl/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/compat	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-rncl/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/control	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1,24 @@
+Source: r-cran-rncl
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-rcpp
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-rncl/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rncl/trunk/
+Homepage: https://cran.r-project.org/web/packages/rncl/
+
+Package: r-cran-rncl
+Architecture: any
+Depends: ${misc:Depends},
+         ${shlibs:Depends},
+         ${R:Depends}
+Description: GNU R interface to the Nexus Class Library
+ This R package provides an interface to the Nexus Class Library which
+ allows parsing of NEXUS, Newick and other phylogenetic tree file
+ formats. It provides elements of the file that can be used to build
+ phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'.

Added: trunk/packages/R/r-cran-rncl/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/copyright	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1,35 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Francois Michonneau <francois.michonneau at gmail.com>
+Source: https://cran.r-project.org/web/packages/rncl/
+
+Files: *
+Copyright: 2013-2015 Francois Michonneau, Ben Bolker, Mark Holder, Paul Lewis, Brian O'Meara
+License: BSD-2-clause
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: BSD-2-clause
+
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
+ IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+ TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
+ PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
+ TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Added: trunk/packages/R/r-cran-rncl/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/rules	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE
+	chmod 644 debian/$(package)/usr/lib/R/site-library/$(cranName)/nexusfiles/co1.nex


Property changes on: trunk/packages/R/r-cran-rncl/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-rncl/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/source/format	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-rncl/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-rncl/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-rncl/trunk/debian/watch	2016-03-22 13:19:46 UTC (rev 21543)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/rncl_([-0-9\.]*).tar.gz
+


