[med-svn] r21570 - in trunk/packages/R: . r-cran-taxize r-cran-taxize/trunk r-cran-taxize/trunk/debian r-cran-taxize/trunk/debian/source r-cran-taxize/trunk/debian/tests

Andreas Tille tille at moszumanska.debian.org
Wed Mar 23 09:16:47 UTC 2016 

Author: tille
Date: 2016-03-23 09:16:47 +0000 (Wed, 23 Mar 2016)
New Revision: 21570

Added:
   trunk/packages/R/r-cran-taxize/
   trunk/packages/R/r-cran-taxize/trunk/
   trunk/packages/R/r-cran-taxize/trunk/debian/
   trunk/packages/R/r-cran-taxize/trunk/debian/README.test
   trunk/packages/R/r-cran-taxize/trunk/debian/changelog
   trunk/packages/R/r-cran-taxize/trunk/debian/compat
   trunk/packages/R/r-cran-taxize/trunk/debian/control
   trunk/packages/R/r-cran-taxize/trunk/debian/copyright
   trunk/packages/R/r-cran-taxize/trunk/debian/docs
   trunk/packages/R/r-cran-taxize/trunk/debian/rules
   trunk/packages/R/r-cran-taxize/trunk/debian/source/
   trunk/packages/R/r-cran-taxize/trunk/debian/source/format
   trunk/packages/R/r-cran-taxize/trunk/debian/tests/
   trunk/packages/R/r-cran-taxize/trunk/debian/tests/control
   trunk/packages/R/r-cran-taxize/trunk/debian/tests/run-unit-test
   trunk/packages/R/r-cran-taxize/trunk/debian/watch
Log:
Inject r-cran-taxize


Added: trunk/packages/R/r-cran-taxize/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/README.test	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+cd tests
+LC_ALL=C R --no-save < testthat.R
+
+in order to confirm its integrity.

Added: trunk/packages/R/r-cran-taxize/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/changelog	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,10 @@
+r-cran-taxize (0.7.4-1) unstable; urgency=low
+
+  * Initial release (Closes: #???)
+  TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-xml2/trunk/
+        svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-bold/trunk/
+        svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-httr/trunk/
+        svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rredlist/trunk/
+        https://anonscm.debian.org/git/debian-med/r-cran-data.table.git
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 21:32:09 +0100

Added: trunk/packages/R/r-cran-taxize/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/compat	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-taxize/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/control	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,32 @@
+Source: r-cran-taxize
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-jsonlite,
+               r-cran-reshape2,
+               r-cran-stringr,
+               r-cran-plyr,
+               r-cran-foreach,
+               r-cran-ape
+               # r-cran-httr,
+               # r-cran-xml2,
+               # r-cran-bold,
+               # 'data.table',
+               # 'rredlist'
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-taxize/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-taxize/trunk/
+Homepage: https://cran.r-project.org/web/packages/taxize/
+
+Package: r-cran-taxize
+Architecture: all
+Depends: ${misc:Depends},
+         ${R:Depends}
+Description: GNU R taxonomic information from around the web
+ GNU R package to interact with a suite of web 'APIs' for taxonomic
+ tasks, such as verifying species names, and getting taxonomic
+ 'hierarchies'.

Added: trunk/packages/R/r-cran-taxize/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/copyright	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,34 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Scott Chamberlain <myrmecocystus at gmail.com>
+Source: https://cran.r-project.org/web/packages/taxize/
+
+Files: *
+Copyright: 2013-2016 Scott Chamberlain <myrmecocystus at gmail.com>
+                     Eduard Szoecs, Zachary Foster, Carl Boettiger,
+                     Karthik Ram, Ignasi Bartomeus, John Baumgartner,
+                     James O'Donnell
+License: MIT
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Added: trunk/packages/R/r-cran-taxize/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/docs	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test

Added: trunk/packages/R/r-cran-taxize/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/rules	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-taxize/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-taxize/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/source/format	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-taxize/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/tests/control	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr

Added: trunk/packages/R/r-cran-taxize/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/tests/run-unit-test	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+oname=taxize
+pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+LC_ALL=C R --no-save < testthat.R
+rm -fr $ADTTMP/*

Added: trunk/packages/R/r-cran-taxize/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-taxize/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-taxize/trunk/debian/watch	2016-03-23 09:16:47 UTC (rev 21570)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/taxize_([-0-9\.]*).tar.gz
+

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