[med-svn] [plip] branch master updated (519db6e -> c17dbcf)
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Thu Mar 24 16:43:51 UTC 2016
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a change to branch master
in repository plip.
from 519db6e No ": " strings allowed as yaml values! You need to quote such strings
new cc950be d/copyright: Remove pdb files from the test suite
new 2a6a909 cme fix dpkg && wrap-and-sort
new b323b47 d/watch: add +dfsg suffix, repack, compression xz
new 4279f15 Imported Upstream version 1.3.0a+dfsg
new 343a5d0 Merge tag 'upstream/1.3.0a+dfsg'
new 3664b86 Add autopkgtest test
new 9e728aa Update changelog
new f1434fa d/watch: Add dversionmangle
new d404769 Use help2man to generate man page, remove manually created manpage
new 1bc99ad d/control: Add python-openbabel, numpy, lxml and pymol to Build-Depends:
new c77c7b7 d/rules: Don't forget to install all other files, tweak help2man options
new f141b32 d/watch: Place options in one line
new c990c1f Update changelog, upload to unstable
new c17dbcf d/control: wrap-and-sort
The 14 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 +
CHANGES.txt | 54 +-
DOCUMENTATION.md | 224 +-
README.md | 8 +-
debian/changelog | 16 +-
debian/control | 27 +-
debian/copyright | 57 +-
debian/plip.manpages | 1 -
debian/plipcmd.1 | 46 -
debian/rules | 15 +
debian/tests/control | 1 +
debian/tests/special-cases | 6 +
debian/watch | 4 +-
plip/__init__.py | 18 +-
plip/modules/__init__.py | 18 +-
plip/modules/config.py | 44 +-
plip/modules/detection.py | 240 +-
plip/modules/mp.py | 69 +
plip/modules/preparation.py | 1015 +-
plip/modules/report.py | 210 +-
plip/modules/supplemental.py | 455 +-
plip/modules/visualize.py | 371 +-
plip/plipcmd | 308 +-
plip/test/pdb/1acj.pdb | 4774 ----
plip/test/pdb/1aku.pdb | 1765 --
plip/test/pdb/1ay8.pdb | 6838 ------
plip/test/pdb/1bju.pdb | 2217 --
plip/test/pdb/1bma.pdb | 2569 ---
plip/test/pdb/1eve.pdb | 5376 -----
plip/test/pdb/1h2t.pdb | 7978 -------
plip/test/pdb/1hii.pdb | 2163 --
plip/test/pdb/1hvi.pdb | 2409 --
plip/test/pdb/1hwu.pdb | 5032 -----
plip/test/pdb/1n7g.pdb | 12315 -----------
plip/test/pdb/1osn.pdb | 11018 ----------
plip/test/pdb/1p5e.pdb | 9844 ---------
plip/test/pdb/1vsn.pdb | 2355 --
plip/test/pdb/1xdn.pdb | 5703 -----
plip/test/pdb/2efj.pdb | 3525 ---
plip/test/pdb/2iuz.pdb | 8056 -------
plip/test/pdb/2reg.pdb | 5374 -----
plip/test/pdb/2w0s.pdb | 3928 ----
plip/test/pdb/2zoz.pdb | 3856 ----
plip/test/pdb/3o1h.pdb | 5090 -----
plip/test/pdb/3og7.pdb | 8757 --------
plip/test/pdb/3pxf.pdb | 3215 ---
plip/test/pdb/3r0t.pdb | 6723 ------
plip/test/pdb/3shy.pdb | 2872 ---
plip/test/pdb/3tah.pdb | 5381 -----
plip/test/pdb/3thy.pdb | 30958 --------------------------
plip/test/pdb/4agl.pdb | 4509 ----
plip/test/pdb/4alw.pdb | 3305 ---
plip/test/pdb/4kya.pdb | 36156 -------------------------------
plip/test/pdb/4pjt.pdb | 22489 -------------------
plip/test/pdb/4qnb.pdb | 4070 ----
plip/test/pdb/4rao.pdb | 14899 -------------
plip/test/pdb/4rdl.pdb | 11637 ----------
plip/test/test_basic_functions.py | 60 +
plip/test/test_literature_validated.py | 208 +-
plip/test/test_metal_coordination.py | 145 +
plip/test/test_special_cases.py | 13 +-
setup.py | 6 +-
62 files changed, 2633 insertions(+), 268163 deletions(-)
delete mode 100644 debian/plip.manpages
delete mode 100644 debian/plipcmd.1
create mode 100644 debian/tests/control
create mode 100755 debian/tests/special-cases
create mode 100644 plip/modules/mp.py
delete mode 100644 plip/test/pdb/1acj.pdb
delete mode 100644 plip/test/pdb/1aku.pdb
delete mode 100644 plip/test/pdb/1ay8.pdb
delete mode 100644 plip/test/pdb/1bju.pdb
delete mode 100644 plip/test/pdb/1bma.pdb
delete mode 100644 plip/test/pdb/1eve.pdb
delete mode 100644 plip/test/pdb/1h2t.pdb
delete mode 100644 plip/test/pdb/1hii.pdb
delete mode 100644 plip/test/pdb/1hvi.pdb
delete mode 100644 plip/test/pdb/1hwu.pdb
delete mode 100644 plip/test/pdb/1n7g.pdb
delete mode 100644 plip/test/pdb/1osn.pdb
delete mode 100644 plip/test/pdb/1p5e.pdb
delete mode 100644 plip/test/pdb/1vsn.pdb
delete mode 100644 plip/test/pdb/1xdn.pdb
delete mode 100644 plip/test/pdb/2efj.pdb
delete mode 100644 plip/test/pdb/2iuz.pdb
delete mode 100644 plip/test/pdb/2reg.pdb
delete mode 100644 plip/test/pdb/2w0s.pdb
delete mode 100644 plip/test/pdb/2zoz.pdb
delete mode 100644 plip/test/pdb/3o1h.pdb
delete mode 100644 plip/test/pdb/3og7.pdb
delete mode 100644 plip/test/pdb/3pxf.pdb
delete mode 100644 plip/test/pdb/3r0t.pdb
delete mode 100644 plip/test/pdb/3shy.pdb
delete mode 100644 plip/test/pdb/3tah.pdb
delete mode 100644 plip/test/pdb/3thy.pdb
delete mode 100644 plip/test/pdb/4agl.pdb
delete mode 100644 plip/test/pdb/4alw.pdb
delete mode 100644 plip/test/pdb/4kya.pdb
delete mode 100644 plip/test/pdb/4pjt.pdb
delete mode 100644 plip/test/pdb/4qnb.pdb
delete mode 100644 plip/test/pdb/4rao.pdb
delete mode 100644 plip/test/pdb/4rdl.pdb
create mode 100644 plip/test/test_basic_functions.py
create mode 100644 plip/test/test_metal_coordination.py
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