[med-svn] [roary] branch master updated (939ddea -> f2fb3bf)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository roary.

      from  939ddea   Added references to registries
       new  c6fdb3c   New upstream version 3.9.1+dfsg
       new  5bad461   Merge tag 'upstream/3.9.1+dfsg'
       new  f2fb3bf   new upstream release

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                                   |   8 +-
 dist.ini                                           |   2 +-
 lib/Bio/Roary.pm                                   |   2 +
 lib/Bio/Roary/CommandLine/Roary.pm                 |  10 +-
 lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm    |   9 +-
 lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm     |   7 +-
 .../Roary/External/GeneAlignmentFromNucleotides.pm |   2 +
 lib/Bio/Roary/External/PostAnalysis.pm             |   5 +
 lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm   | 227 ++++++++++-----------
 lib/Bio/Roary/MergeMultifastaAlignments.pm         |   2 +-
 t/Bio/Roary/ExtractCoreGenesFromSpreadsheet.t      |  67 ++++--
 11 files changed, 200 insertions(+), 141 deletions(-)

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