[med-svn] [ncbi-entrez-direct] 07/08: Update man pages for new 6.10.2017123(+ds) release.

Aaron M. Ucko ucko at moszumanska.debian.org
Wed Jan 25 03:00:00 UTC 2017


This is an automated email from the git hooks/post-receive script.

ucko pushed a commit to branch master
in repository ncbi-entrez-direct.

commit 662ab2f05f19e3500a43f3e1c576568b1bfde210
Author: Aaron M. Ucko <ucko at debian.org>
Date:   Tue Jan 24 21:32:17 2017 -0500

    Update man pages for new 6.10.2017123(+ds) release.
    
    Add run-ncbi-converter.1 and update xtract.1.
---
 debian/man/run-ncbi-converter.1 | 25 +++++++++++++++++++++++++
 debian/man/xtract.1             |  6 ++++++
 2 files changed, 31 insertions(+)

diff --git a/debian/man/run-ncbi-converter.1 b/debian/man/run-ncbi-converter.1
new file mode 100644
index 0000000..6ef1dfa
--- /dev/null
+++ b/debian/man/run-ncbi-converter.1
@@ -0,0 +1,25 @@
+.TH RUN-NCBI-CONVERTER 1 2017-01-24 NCBI "NCBI Entrez Direct User's Manual"
+.SH NAME
+run\-ncbi\-converter \- Run a converter from NCBI's FTP site
+.SH SYNOPSIS
+\fBrun\-ncbi\-converter\fP
+\fIname\fP
+\fIarg\fP [\|...\|]
+.SH DESCRIPTION
+\fBrun\-ncbi\-converter\fP runs one of the tools from
+.UR ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/converters
+NCBI's FTP site
+.UE
+with specified arguments.
+It maintains a cache of downloaded tools in
+\fB$NCBI_CONVERTER_DIR\fP
+(\fB$HOME/.cache/ncbi\-converters\fP by default).
+.SH OPTIONS
+.TP
+\fIname\fP
+Converter to run.
+.TP
+\fIarg\fP
+Argument to supply to it.
+.SH SEE ALSO
+.BR efetch (1).
diff --git a/debian/man/xtract.1 b/debian/man/xtract.1
index 1d6fdef..caeaef3 100644
--- a/debian/man/xtract.1
+++ b/debian/man/xtract.1
@@ -60,6 +60,7 @@ xtract \- convert XML into a table of data values
 [\|\fB\-words\fP\ \fIelement\fP\|]
 [\|\fB\-pairs\fP\ \fIelement\fP\|]
 [\|\fB\-phrase\fP\ \fIelement\fP\|]
+[\|\fB\-letters\fP\ \fIelement\fP\|]
 [\|\fB\-0\-based\fP\ \fIelement\fP\|]
 [\|\fB\-1\-based\fP\ \fIelement\fP\|]
 [\|\fB\-ucsc\-based\fP\ \fIelement\fP\|]
@@ -304,6 +305,9 @@ Adjacent informative words.
 .TP
 \fB\-phrase\fP\ \fIelement\fP
 Experimental index generation.
+.TP
+\fB\-letters\fP\ \fIelement\fP
+Separate individual letters.
 .SS Sequence Coordinates
 .TP
 \fB\-0\-based\fP\ \fIelement\fP
@@ -354,6 +358,8 @@ Print after each record.
 .RS
 .IP \fBcompact\fP 9
 Compress runs of spaces.
+.IP \fBflush\fP 9
+Suppress line indentation.
 .IP \fBindent\fP 9
 Indent according to nesting depth.
 .IP \fBexpand\fP 9

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ncbi-entrez-direct.git



More information about the debian-med-commit mailing list