[med-svn] r23773 - in trunk/packages/R/r-bioc-shortread/tags: . 1.34.0-1 1.34.0-1/patches
Graham Inggs
ginggs at moszumanska.debian.org
Mon May 29 13:51:35 UTC 2017
Author: ginggs
Date: 2017-05-29 13:51:34 +0000 (Mon, 29 May 2017)
New Revision: 23773
Added:
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch
Removed:
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control
trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch
Log:
Tagged 1.34.0-1
Deleted: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/changelog 2017-05-26 15:55:33 UTC (rev 23767)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog 2017-05-29 13:51:34 UTC (rev 23773)
@@ -1,52 +0,0 @@
-r-bioc-shortread (1.32.0-1) unstable; urgency=medium
-
- * New upstream version
- * Convert to dh-r
- * Generic BioConductor homepage
-
- -- Andreas Tille <tille at debian.org> Wed, 26 Oct 2016 17:08:54 +0200
-
-r-bioc-shortread (1.30.0-1) unstable; urgency=medium
-
- * New upstream version
- * cme fix dpkg-control
-
- -- Andreas Tille <tille at debian.org> Mon, 09 May 2016 10:58:41 +0200
-
-r-bioc-shortread (1.28.0-1) unstable; urgency=medium
-
- * New upstream version
- * Ignore false positive lintian warnings
-
- -- Andreas Tille <tille at debian.org> Fri, 06 Nov 2015 08:59:35 +0100
-
-r-bioc-shortread (1.26.0-1) unstable; urgency=medium
-
- * New upstream version
- Closes: #789985
-
- -- Andreas Tille <tille at debian.org> Sat, 27 Jun 2015 19:18:04 +0200
-
-r-bioc-shortread (1.24.0-1) experimental; urgency=medium
-
- * New upstream version
- * cme fix dpkg-control
- * adapt testsuite
-
- -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 21:21:30 +0200
-
-r-bioc-shortread (1.22.0-1) unstable; urgency=medium
-
- * New upstream version
- * Moved debian/upstream to debian/upstream/metadata
- * Add autopkgtest
- * (Build-)Depends: r-bioc-genomicalignments
- Closes: #753224
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jul 2014 11:38:30 +0200
-
-r-bioc-shortread (1.20.0-1) unstable; urgency=low
-
- * Initial release (closes: #731085)
-
- -- Andreas Tille <tille at debian.org> Mon, 04 Nov 2013 17:24:35 +0100
Copied: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog (from rev 23772, trunk/packages/R/r-bioc-shortread/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog (rev 0)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/changelog 2017-05-29 13:51:34 UTC (rev 23773)
@@ -0,0 +1,60 @@
+r-bioc-shortread (1.34.0-1) unstable; urgency=medium
+
+ * Team upload
+ * New upstream version
+ * Add Build-Depends: r-bioc-rsamtools (>= 1.28.0)
+
+ -- Graham Inggs <ginggs at debian.org> Mon, 29 May 2017 15:13:59 +0200
+
+r-bioc-shortread (1.32.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * Convert to dh-r
+ * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org> Wed, 26 Oct 2016 17:08:54 +0200
+
+r-bioc-shortread (1.30.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org> Mon, 09 May 2016 10:58:41 +0200
+
+r-bioc-shortread (1.28.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * Ignore false positive lintian warnings
+
+ -- Andreas Tille <tille at debian.org> Fri, 06 Nov 2015 08:59:35 +0100
+
+r-bioc-shortread (1.26.0-1) unstable; urgency=medium
+
+ * New upstream version
+ Closes: #789985
+
+ -- Andreas Tille <tille at debian.org> Sat, 27 Jun 2015 19:18:04 +0200
+
+r-bioc-shortread (1.24.0-1) experimental; urgency=medium
+
+ * New upstream version
+ * cme fix dpkg-control
+ * adapt testsuite
+
+ -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 21:21:30 +0200
+
+r-bioc-shortread (1.22.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * Moved debian/upstream to debian/upstream/metadata
+ * Add autopkgtest
+ * (Build-)Depends: r-bioc-genomicalignments
+ Closes: #753224
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jul 2014 11:38:30 +0200
+
+r-bioc-shortread (1.20.0-1) unstable; urgency=low
+
+ * Initial release (closes: #731085)
+
+ -- Andreas Tille <tille at debian.org> Mon, 04 Nov 2013 17:24:35 +0100
Deleted: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/control 2017-05-26 15:55:33 UTC (rev 23767)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control 2017-05-29 13:51:34 UTC (rev 23773)
@@ -1,31 +0,0 @@
-Source: r-bioc-shortread
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
-Section: gnu-r
-Priority: optional
-Build-Depends: debhelper (>= 9),
- dh-r,
- r-base-dev,
- r-cran-latticeextra,
- r-bioc-biobase (>= 2.26.0),
- r-bioc-genomicalignments (>= 1.8.0),
- r-cran-hwriter
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
-Homepage: https://bioconductor.org/packages/ShortRead/
-
-Package: r-bioc-shortread
-Architecture: any
-Depends: ${R:Depends},
- ${misc:Depends},
- ${shlibs:Depends},
-Recommends: ${R:Recommends}
-Suggests: ${R:Suggests}
-Description: GNU R classes and methods for high-throughput short-read sequencing data
- This BioConductor module is a package for input, quality assessment,
- manipulation and output of high-throughput sequencing data. ShortRead is
- provided in the R and Bioconductor environments, allowing ready access
- to additional facilities for advanced statistical analysis, data
- transformation, visualization and integration with diverse genomic
- resources.
Copied: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control (from rev 23772, trunk/packages/R/r-bioc-shortread/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control (rev 0)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/control 2017-05-29 13:51:34 UTC (rev 23773)
@@ -0,0 +1,32 @@
+Source: r-bioc-shortread
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ dh-r,
+ r-base-dev,
+ r-bioc-biobase (>= 2.26.0),
+ r-bioc-genomicalignments (>= 1.8.0),
+ r-bioc-rsamtools (>= 1.28.0),
+ r-cran-hwriter,
+ r-cran-latticeextra
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
+Homepage: https://bioconductor.org/packages/ShortRead/
+
+Package: r-bioc-shortread
+Architecture: any
+Depends: ${R:Depends},
+ ${misc:Depends},
+ ${shlibs:Depends},
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: GNU R classes and methods for high-throughput short-read sequencing data
+ This BioConductor module is a package for input, quality assessment,
+ manipulation and output of high-throughput sequencing data. ShortRead is
+ provided in the R and Bioconductor environments, allowing ready access
+ to additional facilities for advanced statistical analysis, data
+ transformation, visualization and integration with diverse genomic
+ resources.
Deleted: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch 2017-05-26 15:55:33 UTC (rev 23767)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch 2017-05-29 13:51:34 UTC (rev 23773)
@@ -1,27 +0,0 @@
-/home/tillea/debian-maintain/repack/r-bioc-rsamtools/debian/patches/use_debian_packaged_zlib.patch 827/874 94%
-Author: Andreas Tille <tille at debian.org>
-LastChanged: Sun, 01 Dec 2013 09:45:58 +0100
-Description: If the systems includes zlib natively there is no point in
- requiring the import of zlibbioc
-
---- a/NAMESPACE
-+++ b/NAMESPACE
-@@ -1,6 +1,6 @@
- useDynLib(ShortRead, .registration=TRUE)
-
--import(zlibbioc, methods, BiocGenerics, S4Vectors, IRanges,
-+import(methods, BiocGenerics, S4Vectors, IRanges,
- Biostrings, GenomeInfoDb, GenomicRanges, GenomicAlignments,
- Rsamtools, Biobase)
-
---- a/DESCRIPTION
-+++ b/DESCRIPTION
-@@ -18,7 +18,7 @@ Depends: BiocGenerics (>= 0.11.3), BiocP
- 2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
- Imports: Biobase, S4Vectors (>= 0.7.1), IRanges (>= 2.3.7),
- GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
-- methods, zlibbioc, lattice, latticeExtra,
-+ methods, lattice, latticeExtra,
- Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
- LinkingTo: S4Vectors, IRanges, XVector, Biostrings
- biocViews: DataImport, Sequencing, QualityControl
Copied: trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch (from rev 23772, trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch)
===================================================================
--- trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch (rev 0)
+++ trunk/packages/R/r-bioc-shortread/tags/1.34.0-1/patches/use_debian_packaged_zlib.patch 2017-05-29 13:51:34 UTC (rev 23773)
@@ -0,0 +1,27 @@
+/home/tillea/debian-maintain/repack/r-bioc-rsamtools/debian/patches/use_debian_packaged_zlib.patch 827/874 94%
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Sun, 01 Dec 2013 09:45:58 +0100
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -1,6 +1,6 @@
+ useDynLib(ShortRead, .registration=TRUE)
+
+-import(zlibbioc, methods, BiocGenerics, S4Vectors, IRanges,
++import(methods, BiocGenerics, S4Vectors, IRanges,
+ Biostrings, GenomeInfoDb, GenomicRanges, GenomicAlignments,
+ Rsamtools, Biobase)
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -18,7 +18,7 @@
+ 2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
+ Imports: Biobase, S4Vectors (>= 0.13.8), IRanges (>= 2.3.7),
+ GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
+- methods, zlibbioc, lattice, latticeExtra,
++ methods, lattice, latticeExtra,
+ Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
+ LinkingTo: S4Vectors, IRanges, XVector, Biostrings
+ biocViews: DataImport, Sequencing, QualityControl
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