[med-svn] [iva] branch master updated (f05fa06 -> 729c4c4)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository iva.

      from  f05fa06   Added refs to registries
       new  1299970   New upstream version 1.0.9+ds
       new  716be89   Update upstream source from tag 'upstream/1.0.9+ds'
       new  a4e9bff   remove obsolete patch files
       new  26b7b63   dch -r
       new  729c4c4   use secure copyright format link

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                        |   9 ++
 AUTHORS                                            |   4 +-
 LICENSE                                            |   4 +
 debian/changelog                                   |  10 +-
 debian/copyright                                   |   2 +-
 debian/patches/add-shebang-line-to-getMummerStats  |  11 --
 debian/patches/adjust_required_pysam_version.patch |  17 ---
 debian/patches/remove-pypi-deps-from-setup-py      |  17 ---
 debian/patches/samtools_fix.patch                  | 120 -----------------
 debian/patches/spelling.patch                      |  13 --
 install_dependencies.sh                            |   2 +-
 iva/external_progs.py                              |   2 +-
 iva/tests/external_progs_test.py                   | 142 ++++++++++++++++++++-
 setup.py                                           |   2 +-
 14 files changed, 164 insertions(+), 191 deletions(-)
 delete mode 100644 debian/patches/add-shebang-line-to-getMummerStats
 delete mode 100644 debian/patches/adjust_required_pysam_version.patch
 delete mode 100644 debian/patches/remove-pypi-deps-from-setup-py
 delete mode 100644 debian/patches/samtools_fix.patch
 delete mode 100644 debian/patches/spelling.patch

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