[med-svn] [Git][med-team/rambo-k][master] 7 commits: Apply patch from Steve Langasek

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / rambo-k


Commits:
95df3615 by Andreas Tille at 2019-08-17T05:03:20Z
Apply patch from Steve Langasek

- - - - -
59c1ded6 by Andreas Tille at 2019-08-17T05:04:09Z
Update changelog

- - - - -
8b3be713 by Andreas Tille at 2019-08-17T05:05:08Z
DEP3

- - - - -
5391a1fb by Andreas Tille at 2019-08-17T05:05:30Z
debhelper-compat 12

- - - - -
e0836ef5 by Andreas Tille at 2019-08-17T05:05:36Z
Standards-Version: 4.4.0

- - - - -
2267647d by Andreas Tille at 2019-08-17T05:05:36Z
Secure URI in copyright format

- - - - -
9445a8ed by Andreas Tille at 2019-08-17T05:08:21Z
Upload to unstable

- - - - -


7 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/patches/python3.patch
- + debian/patches/series
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+rambo-k (1.21+dfsg-3) unstable; urgency=medium
+
+  [ Steve Langasek ]
+  * Use Python3
+    Closes: #934882
+
+  [ Andreas Tille ]
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Secure URI in copyright format
+
+ -- Andreas Tille <tille at debian.org>  Sat, 17 Aug 2019 07:05:46 +0200
+
 rambo-k (1.21+dfsg-2) unstable; urgency=medium
 
   * debhelper 11


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,14 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                javahelper,
                default-jdk,
                dh-python,
-               python-all,
+               python3-all,
                libcommons-cli-java,
                liblog4j1.2-java
-Standards-Version: 4.1.5
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/rambo-k
 Vcs-Git: https://salsa.debian.org/med-team/rambo-k.git
 Homepage: http://rambok.sourceforge.net/
@@ -18,9 +18,9 @@ Homepage: http://rambok.sourceforge.net/
 Package: rambo-k
 Architecture: all
 Depends: ${java:Depends},
-         ${python:Depends},
+         ${python3:Depends},
          ${misc:Depends},
-         python-sklearn
+         python3-sklearn
 Description: Read Assignment Method Based On K-mers
  RAMBO-K is a tool for rapid and sensitive removal of background sequences
  from Next Generation Sequencing data.


=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: RAMBO-K
 Upstream-Contact: Simon Tausch <TauschS at rki.de>
 Source: http://sourceforge.net/projects/rambok/files/


=====================================
debian/patches/python3.patch
=====================================
@@ -0,0 +1,15 @@
+Date: Fri, 16 Aug 2019 00:53:48 -0700
+From: Steve Langasek <steve.langasek at canonical.com>
+Bug-Debian: https://bugs.debian.org/934882
+Description: Fix interpreter line
+
+Index: rambo-k-1.21+dfsg/RAMBOK.py
+===================================================================
+--- rambo-k-1.21+dfsg.orig/RAMBOK.py
++++ rambo-k-1.21+dfsg/RAMBOK.py
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/env python3
+ import os
+ import argparse
+ import simulate_reads


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+python3.patch


=====================================
debian/rules
=====================================
@@ -5,7 +5,7 @@
 include /usr/share/dpkg/default.mk
 
 %:
-	dh $@ --with javahelper --with python2
+	dh $@ --with javahelper --with python3
 
 override_dh_auto_build:
 	CLASSPATH=/usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/:ReadClassifier_eclipse/src/ jh_build classifier.jar ReadClassifier_eclipse



View it on GitLab: https://salsa.debian.org/med-team/rambo-k/compare/5c5e0f5cfec5d48946e216c8a28c9fb5a5350915...9445a8ed620c8c2a7cad7b36554b9c59bd5205d9

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View it on GitLab: https://salsa.debian.org/med-team/rambo-k/compare/5c5e0f5cfec5d48946e216c8a28c9fb5a5350915...9445a8ed620c8c2a7cad7b36554b9c59bd5205d9
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