[med-svn] [Git][med-team/ncbi-blastplus][master] 11 commits: New upstream version 2.8.1

[Aaron M. Ucko]

Aaron M. Ucko pushed to branch master at Debian Med / ncbi-blastplus


Commits:
61579cd4 by Aaron M. Ucko at 2019-02-03T15:38:33Z
New upstream version 2.8.1
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bdddc99b by Aaron M. Ucko at 2019-02-03T15:40:38Z
Update upstream source from tag 'upstream/2.8.1'

Update to upstream version '2.8.1'
with Debian dir 785b856f53e6541a2e59cc0ffda36a1128cff340
(modulo a formal changelog addition).

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a4009181 by Aaron M. Ucko at 2019-02-03T23:14:05Z
debian/patches: Formally update for new release (2.8.1).

* Retire support_boost_1_67 (already applied upstream).
* Update patches that apply with offsets or outright fuzz, or need
  full-fledged porting.

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87cc541f by Aaron M. Ucko at 2019-02-04T02:40:02Z
debian/patches/fix_lib_deps: Link xcleanup against $(OBJEDIT_LIBS).

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96c2c662 by Aaron M. Ucko at 2019-02-04T02:40:46Z
debian/control: Build-Depend on liblmdb-dev.

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2b183ea1 by Aaron M. Ucko at 2019-02-04T02:43:23Z
d/p/system_mbedtls_only (new): Omit convenience mbed TLS copy

... which is dead weight and yielded a Lintian error.

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3838862a by Aaron M. Ucko at 2019-02-04T03:05:36Z
Fully streamline builds covering only Architecture: all.

* debian/control: Split B-Ds other than Debhelper out to Build-Depends-Arch.
* debian/rules: Also skip (dh_auto)_configure when building only
  architecture-independent binary packages.

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af446722 by Aaron M. Ucko at 2019-02-04T03:44:01Z
Advance to Debhelper 11.

* debian/compat: Advance to Debhelper 11.
* debian/control: Advance Debhelper requirement to 11~.

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5dbd8153 by Aaron M. Ucko at 2019-02-04T03:45:20Z
debian/control: Standards-Version: 4.3.0 (already compliant).

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8a1bcbe1 by Aaron M. Ucko at 2019-02-04T03:46:01Z
debian/control: Rules-Requires-Root: no.

- - - - -
492d2458 by Aaron M. Ucko at 2019-02-04T03:47:46Z
Finalize ncbi-blast+ 2.8.1-1 for unstable.

- - - - -


30 changed files:

- c++/compilers/cygwin/build.sh
- c++/compilers/unix/ICC.sh
- − c++/compilers/vs2013/msvcvars.bat
- c++/compilers/vs2015/check.sh
- c++/compilers/vs2015/configure.bat
- c++/compilers/vs2015/dll/build/gbench/gbench_install/gbench-install.vcxproj
- c++/compilers/vs2015/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj
- c++/compilers/vs2015/dll/third_party_dll_install.mak
- c++/compilers/vs2015/install.sh
- + c++/compilers/vs2015/protoc.bat
- c++/compilers/vs2015/ptb.bat
- c++/compilers/vs2015/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj
- c++/compilers/vs2015/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj
- c++/compilers/vs2015/static/build/util/regexp/regexp.lib.vcxproj
- c++/compilers/vs2015/static/build/util/xutil.lib.vcxproj
- c++/compilers/vs2015/static/third_party_static_install.mak
- c++/compilers/vs2015/third_party_install.meta.mk
- c++/compilers/vs2013/Makefile.WinMain.app.msvc → c++/compilers/vs2017/Makefile.WinMain.app.msvc
- c++/compilers/vs2013/Makefile.wxWidgets.app.msvc → c++/compilers/vs2017/Makefile.wxWidgets.app.msvc
- c++/compilers/vs2013/build.sh → c++/compilers/vs2017/build.sh
- c++/compilers/vs2013/build_exec.bat → c++/compilers/vs2017/build_exec.bat
- c++/compilers/vs2013/build_util.sh → c++/compilers/vs2017/build_util.sh
- c++/compilers/vs2013/check.sh → c++/compilers/vs2017/check.sh
- c++/compilers/vs2013/configure.bat → c++/compilers/vs2017/configure.bat
- c++/compilers/vs2013/datatool.bat → c++/compilers/vs2017/datatool.bat
- c++/compilers/vs2013/dll/build/UtilityProjects/_CONFIGURE_.vcxproj → c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_.vcxproj
- c++/compilers/vs2013/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj → c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
- c++/compilers/vs2013/dll/build/UtilityProjects/configure._ → c++/compilers/vs2017/dll/build/UtilityProjects/configure._
- c++/compilers/vs2013/dll/build/UtilityProjects/configure_dialog._ → c++/compilers/vs2017/dll/build/UtilityProjects/configure_dialog._
- c++/compilers/vs2013/dll/build/all.bat → c++/compilers/vs2017/dll/build/all.bat


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/compare/28b66a8a37157836b90be700a66d392eef60cc84...492d24583f6f6560a42a0def43c772a1e1bccc3b

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View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/compare/28b66a8a37157836b90be700a66d392eef60cc84...492d24583f6f6560a42a0def43c772a1e1bccc3b
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