[med-svn] [Git][med-team/ecopcr][upstream] New upstream version 1.0.1+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / ecopcr


Commits:
b37f9f80 by Andreas Tille at 2019-01-26T10:16:20Z
New upstream version 1.0.1+dfsg
- - - - -


2 changed files:

- VERSION
- src/ecopcr.c


Changes:

=====================================
VERSION
=====================================
@@ -1 +1 @@
-0.8.0
+1.0.0


=====================================
src/ecopcr.c
=====================================
@@ -6,7 +6,7 @@
 #include <getopt.h>
 
 
-#define VERSION "1.0.0"
+#define VERSION "1.0.1"
 
 
 /* ----------------------------------------------- */
@@ -610,13 +610,12 @@ int main(int argc, char **argv)
 									{
 										posj+=o2c->patlen;
 										// printf("coucou %d %d %d\n",posi,posj,apatseq->seqlen);
-										errj  =apatseq->hiterr[1]->val[j];
+										errj = apatseq->hiterr[1]->val[j];
 										length = 0;
 										if (posj > posi)
 											length = posj - posi - o1->patlen - o2->patlen;
 										if (posj < posi)
-											//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;   // TODO
-											length = posi - posj - o1->patlen - o2->patlen;
+											length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
 										if ((length>0) &&	// For when primers touch or overlap
 											(!lmin || (length >= lmin)) &&
 											(!lmax || (length <= lmax)))
@@ -668,11 +667,9 @@ int main(int argc, char **argv)
 
 										length = 0;
 										if (posj > posi)
-											//length = posj - posi + 1  - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */ TODO ????
-											length = posj - posi - o2->patlen - o1->patlen;
+											length = posj - posi + 1  - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */
 										if (posj < posi)
-											//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen; TODO ????
-											length = posi - posj - o2->patlen - o1->patlen;
+											length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
 										if ((length>0) &&	// For when primers touch or overlap
 											(!lmin || (length >= lmin)) &&
 											(!lmax || (length <= lmax)))



View it on GitLab: https://salsa.debian.org/med-team/ecopcr/commit/b37f9f805e4d928bf0bd7257d95dd7493130edff

-- 
View it on GitLab: https://salsa.debian.org/med-team/ecopcr/commit/b37f9f805e4d928bf0bd7257d95dd7493130edff
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