[med-svn] [Git][med-team/vg][master] libVCFH is unneeded

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / vg


Commits:
5c1e0b81 by Michael R. Crusoe at 2020-01-13T15:40:42+01:00
libVCFH is unneeded

- - - - -


2 changed files:

- + debian/patches/libVCFH_unneeded
- debian/patches/series


Changes:

=====================================
debian/patches/libVCFH_unneeded
=====================================
@@ -0,0 +1,13 @@
+Author: Michael R. Crusoe <michael.crusoe at gmail.com>
+Description: libVCFH is unneeded
+--- vg.orig/Makefile
++++ vg/Makefile
+@@ -36,7 +36,7 @@
+ # Define libraries to link against. Make sure to always link statically against
+ # htslib and libdeflate and Protobuf so that we can use position-dependent code
+ # there for speed.
+-LD_LIB_FLAGS:= -L$(CWD)/$(LIB_DIR) $(CWD)/$(LIB_DIR)/libvgio.a -lz -lvcflib -lgssw -lssw -lprotobuf -lsublinearLS $(CWD)/$(LIB_DIR)/libhts.a -ldeflate -lpthread -ljansson -lncurses -lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lvcfh -lraptor2 -lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw -lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph $(shell pkg-config --libs libfastahack) $(shell pkg-config --libs libsmithwaterman)
++LD_LIB_FLAGS:= -L$(CWD)/$(LIB_DIR) $(CWD)/$(LIB_DIR)/libvgio.a -lz -lvcflib -lgssw -lssw -lprotobuf -lsublinearLS $(CWD)/$(LIB_DIR)/libhts.a -ldeflate -lpthread -ljansson -lncurses -lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lraptor2 -lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw -lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph $(shell pkg-config --libs libfastahack) $(shell pkg-config --libs libsmithwaterman)
+ # Use pkg-config to find Cairo and all the libs it uses
+ LD_LIB_FLAGS += $(shell pkg-config --libs cairo jansson)
+ 


=====================================
debian/patches/series
=====================================
@@ -25,3 +25,4 @@ static
 use_packaged_lz4
 parallize_better
 use_packaged_libtsl-hopscotch-map-dev
+libVCFH_unneeded



View it on GitLab: https://salsa.debian.org/med-team/vg/commit/5c1e0b81867baf83961fd19ad33cde3528981996

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View it on GitLab: https://salsa.debian.org/med-team/vg/commit/5c1e0b81867baf83961fd19ad33cde3528981996
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