[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Tue Oct 27 13:45:18 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
7dcf18b8 by Andreas Tille at 2020-10-27T13:45:14+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,57 +1,59 @@
-Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
+Last-Update: Tue, 27 Oct 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    173 | {covid-19,imaging}                                  | 
- orthanc                       |     92 | {practice,imaging,covid-19}                         | 
- orthanc-wsi                   |     46 | {practice,covid-19,his,oncology,imaging,laboratory} | 
- gdcm                          |     39 | {imaging-dev}                                       | 
+ dcmtk                         |    177 | {covid-19,imaging}                                  | 
+ orthanc                       |     95 | {practice,imaging,covid-19}                         | 
+ orthanc-wsi                   |     47 | {practice,covid-19,his,oncology,imaging,laboratory} | 
+ gdcm                          |     41 | {imaging-dev}                                       | 
  htsjdk                        |     35 | {bio-dev}                                           | 
- dicom3tools                   |     32 | {imaging}                                           | 
- dicomscope                    |     31 | {imaging}                                           | 
- dcm2niix                      |     21 | {imaging}                                           | 
+ dicomscope                    |     34 | {imaging}                                           | 
+ dicom3tools                   |     33 | {imaging}                                           | 
+ dcm2niix                      |     22 | {imaging}                                           | 
+ gnumed-server                 |     18 | {practice,covid-19}                                 | 
  gdcm                          |     17 | {imaging,covid-19}                                  | 
- gnumed-server                 |     17 | {practice,covid-19}                                 | 
  gdcm                          |     15 | {imaging-dev}                                       | 
  ngs-sdk                       |     15 | {bio-dev}                                           | 
  biosig                        |     14 | {imaging,physics}                                   | 
  invesalius                    |     14 | {imaging}                                           | 
  minc-tools                    |     14 | {imaging}                                           | 
+ pixelmed                      |     13 | {imaging}                                           | 
  nifticlib                     |     12 | {imaging}                                           | 
- pixelmed                      |     12 | {imaging}                                           | 
  ngs-sdk                       |     11 | {bio-dev}                                           | 
- nifticlib                     |     10 | {imaging-dev}                                       | 
- adun.app                      |      9 | {bio}                                               | 
- insighttoolkit4               |      9 | {imaging-dev}                                       | 
+ nifticlib                     |     11 | {imaging-dev}                                       | 
+ adun.app                      |     10 | {bio}                                               | 
+ insighttoolkit4               |     10 | {imaging-dev}                                       | 
+ openslide                     |     10 | {imaging}                                           | 
  king                          |      9 | {imaging,typesetting}                               | 
  librg-utils-perl              |      9 | {bio}                                               | 
  obitools                      |      9 | {bio}                                               | 
  plastimatch                   |      9 | {imaging}                                           | 
  vtk-dicom                     |      9 | {imaging}                                           | 
+ dicompyler                    |      8 | {oncology}                                          | 
  melting                       |      8 | {bio,cloud}                                         | 
- openslide                     |      8 | {imaging}                                           | 
- staden                        |      8 | {bio}                                               | 
- dicompyler                    |      7 | {oncology}                                          | 
  ea-utils                      |      7 | {bio}                                               | 
  orthanc-webviewer             |      7 | {imaging}                                           | 
+ staden                        |      7 | {bio}                                               | 
  biojava-live                  |      6 | {bio-dev}                                           | 
  biomaj3-cli                   |      6 | {cloud}                                             | 
  jebl2                         |      6 | {bio-dev}                                           | 
  multiqc                       |      6 | {covid-19,bio}                                      | 
- ngs-sdk                       |      6 | {bio-dev}                                           | 
  predictprotein                |      6 | {bio}                                               | 
  pymia                         |      6 | {imaging-dev}                                       | 
  stacks                        |      6 | {bio}                                               | 
- anfo                          |      5 | {bio,cloud}                                         | 
+ treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  bart-view                     |      5 | {imaging}                                           | 
+ elastix                       |      5 | {imaging}                                           | 
  fastlink                      |      5 | {cloud,bio}                                         | 
  lagan                         |      5 | {bio}                                               | 
+ libminc                       |      5 | {imaging-dev}                                       | 
  mipe                          |      5 | {cloud,bio}                                         | 
+ ngs-sdk                       |      5 | {bio-dev}                                           | 
  orthanc-dicomweb              |      5 | {covid-19,imaging}                                  | 
  salmon                        |      5 | {bio,covid-19}                                      | 
  sibsim4                       |      5 | {bio,cloud}                                         | 
- treeview                      |      5 | {bio,bio-phylogeny}                                 | 
  alter-sequence-alignment      |      4 | {bio}                                               | 
+ anfo                          |      4 | {bio,cloud}                                         | 
  assemblytics                  |      4 | {bio}                                               | 
  beast-mcmc                    |      4 | {bio-phylogeny,bio}                                 | 
  biomaj3-daemon                |      4 | {bio}                                               | 
@@ -60,23 +62,23 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  clonalorigin                  |      4 | {bio}                                               | 
  delly                         |      4 | {covid-19,bio}                                      | 
  ecopcr                        |      4 | {bio}                                               | 
- elastix                       |      4 | {imaging}                                           | 
  embassy-domalign              |      4 | {cloud,bio}                                         | 
  embassy-domsearch             |      4 | {cloud,bio}                                         | 
  estscan                       |      4 | {bio}                                               | 
  gatb-core                     |      4 | {bio}                                               | 
  jellyfish1                    |      4 | {bio}                                               | 
+ lamarc                        |      4 | {bio}                                               | 
  libdivsufsort                 |      4 | {bio-dev}                                           | 
- libminc                       |      4 | {imaging-dev}                                       | 
  libncl                        |      4 | {bio}                                               | 
- libsbml                       |      4 | {bio-dev}                                           | 
  mrs                           |      4 | {bio}                                               | 
  phast                         |      4 | {bio}                                               | 
+ phybin                        |      4 | {bio}                                               | 
  phyutility                    |      4 | {cloud,bio}                                         | 
  piler                         |      4 | {bio}                                               | 
  placnet                       |      4 | {bio}                                               | 
  prime-phylo                   |      4 | {cloud,bio}                                         | 
  rambo-k                       |      4 | {bio}                                               | 
+ saint                         |      4 | {bio}                                               | 
  seqsero                       |      4 | {bio}                                               | 
  soapsnp                       |      4 | {bio}                                               | 
  spread-phy                    |      4 | {bio,bio-phylogeny}                                 | 
@@ -91,9 +93,10 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  embassy-domainatrix           |      3 | {bio,cloud}                                         | 
  fastml                        |      3 | {bio}                                               | 
  fsm-lite                      |      3 | {bio}                                               | 
+ getdata                       |      3 | {bio}                                               | 
  ghmm                          |      3 | {bio}                                               | 
  hinge                         |      3 | {bio}                                               | 
- lamarc                        |      3 | {bio}                                               | 
+ libsbml                       |      3 | {bio-dev}                                           | 
  mauve-aligner                 |      3 | {bio}                                               | 
  mhap                          |      3 | {bio,bio-ngs}                                       | 
  microbegps                    |      3 | {bio}                                               | 
@@ -102,14 +105,14 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  orthanc-mysql                 |      3 | {imaging}                                           | 
  orthanc-postgresql            |      3 | {imaging}                                           | 
  paraclu                       |      3 | {cloud,bio}                                         | 
+ pbdagcon                      |      3 | {bio}                                               | 
  perm                          |      3 | {cloud,bio}                                         | 
- phybin                        |      3 | {bio}                                               | 
  plasmidseeker                 |      3 | {bio}                                               | 
  pscan-chip                    |      3 | {bio}                                               | 
  quorum                        |      3 | {bio}                                               | 
  radiant                       |      3 | {bio}                                               | 
  rtax                          |      3 | {bio,cloud}                                         | 
- saint                         |      3 | {bio}                                               | 
+ runcircos-gui                 |      3 | {bio}                                               | 
  samblaster                    |      3 | {bio,covid-19}                                      | 
  scrm                          |      3 | {bio}                                               | 
  segemehl                      |      3 | {bio}                                               | 
@@ -119,12 +122,12 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  sprai                         |      3 | {bio}                                               | 
  suitename                     |      3 | {bio}                                               | 
  surankco                      |      3 | {bio}                                               | 
+ zalign                        |      3 | {bio,cloud}                                         | 
  acedb                         |      2 | {bio,cloud}                                         | 
  atropos                       |      2 | {bio}                                               | 
  canu                          |      2 | {bio}                                               | 
  cat-bat                       |      2 | {bio,covid-19}                                      | 
  emmax                         |      2 | {bio}                                               | 
- getdata                       |      2 | {bio}                                               | 
  ipig                          |      2 | {bio}                                               | 
  jmodeltest                    |      2 | {bio,bio-phylogeny}                                 | 
  kmerresistance                |      2 | {bio}                                               | 
@@ -133,21 +136,17 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  logol                         |      2 | {bio}                                               | 
  nutsqlite                     |      2 | {tools}                                             | 
  oscar                         |      2 | {data,practice,tools}                               | 
- papyrus                       |      2 | {imaging-dev}                                       | 
- pbdagcon                      |      2 | {bio}                                               | 
  pilercr                       |      2 | {bio}                                               | 
  proalign                      |      2 | {bio,bio-phylogeny}                                 | 
  prottest                      |      2 | {bio-phylogeny,bio}                                 | 
  qcumber                       |      2 | {bio}                                               | 
  rdp-alignment                 |      2 | {bio}                                               | 
  rdp-classifier                |      2 | {bio}                                               | 
- runcircos-gui                 |      2 | {bio}                                               | 
  sga                           |      2 | {bio}                                               | 
  skesa                         |      2 | {bio}                                               | 
  stringtie                     |      2 | {covid-19,bio}                                      | 
  trace2dbest                   |      2 | {bio}                                               | 
  tvc                           |      2 | {bio}                                               | 
- zalign                        |      2 | {bio,cloud}                                         | 
  bbmap                         |      1 | {bio,covid-19}                                      | 
  biosig                        |      1 | {physics,imaging-dev}                               | 
  blasr                         |      1 | {bio,bio-ngs}                                       | 
@@ -164,6 +163,7 @@ Last-Update: Tue, 27 Oct 2020 01:42:04 +0000
  metaphlan2                    |      1 | {bio}                                               | 
  nanosv                        |      1 | {bio,covid-19}                                      | 
  opensurgsim                   |      1 | {imaging-dev}                                       | 
+ papyrus                       |      1 | {imaging-dev}                                       | 
  pique                         |      1 | {bio}                                               | 
  plasmidid                     |      1 | {covid-19,bio}                                      | 
  pplacer                       |      1 | {bio,bio-phylogeny,covid-19}                        | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7dcf18b81337cee9bbe7f4c1d9070bc3f9969662

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7dcf18b81337cee9bbe7f4c1d9070bc3f9969662
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