Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b63d103a by Andreas Tille at 2021-04-11T13:42:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,41 @@
-Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
+Last-Update: Sun, 11 Apr 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 204 | {covid-19,imaging} |
- orthanc | 98 | {covid-19,imaging,practice} |
- orthanc-wsi | 48 | {his,practice,covid-19,oncology,imaging,laboratory} |
- amide | 39 | {imaging} |
- gdcm | 39 | {imaging-dev} |
- dicom3tools | 33 | {imaging} |
- nipype | 28 | {imaging-dev,imaging} |
- openslide | 26 | {imaging} |
- dcm2niix | 25 | {imaging} |
+ dcmtk | 203 | {covid-19,imaging} |
+ orthanc | 97 | {covid-19,practice,imaging} |
+ orthanc-wsi | 47 | {laboratory,imaging,his,oncology,covid-19,practice} |
+ gdcm | 40 | {imaging-dev} |
+ amide | 38 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ nipype | 30 | {imaging,imaging-dev} |
+ openslide | 27 | {imaging} |
+ dcm2niix | 26 | {imaging} |
dicomscope | 25 | {imaging} |
- odin | 21 | {imaging,imaging-dev} |
- gdcm | 20 | {covid-19,imaging} |
+ gdcm | 22 | {covid-19,imaging} |
+ odin | 21 | {imaging-dev,imaging} |
htsjdk | 20 | {bio-dev} |
+ nifticlib | 19 | {imaging} |
minc-tools | 18 | {imaging} |
- nifticlib | 18 | {imaging} |
gdcm | 17 | {imaging-dev} |
dicomnifti | 16 | {imaging} |
- gnumed-server | 15 | {covid-19,practice} |
- invesalius | 15 | {imaging} |
+ gnumed-server | 15 | {practice,covid-19} |
+ pixelmed | 15 | {imaging} |
+ vtk-dicom | 15 | {imaging} |
+ invesalius | 14 | {imaging} |
mia | 14 | {imaging} |
- pixelmed | 14 | {imaging} |
- vtk-dicom | 14 | {imaging} |
+ plastimatch | 13 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
orthanc-webviewer | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
adun.app | 10 | {bio} |
nifti2dicom | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
- king | 8 | {typesetting,imaging} |
+ king | 8 | {imaging,typesetting} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
melting | 7 | {cloud,bio} |
- treeview | 7 | {bio-phylogeny,bio} |
- bamkit | 6 | {bio,covid-19} |
+ treeview | 7 | {bio,bio-phylogeny} |
+ bamkit | 6 | {covid-19,bio} |
biomaj3-cli | 6 | {cloud} |
ea-utils | 6 | {bio} |
lagan | 6 | {bio} |
@@ -51,20 +51,20 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
librg-utils-perl | 4 | {bio} |
- orthanc-dicomweb | 4 | {imaging,covid-19} |
+ orthanc-dicomweb | 4 | {covid-19,imaging} |
orthanc-mysql | 4 | {imaging} |
phast | 4 | {bio} |
pymia | 4 | {imaging-dev} |
- salmon | 4 | {covid-19,bio} |
+ salmon | 4 | {bio,covid-19} |
tracetuner | 4 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
biojava-live | 3 | {bio-dev} |
bio-tradis | 3 | {bio,bio-dev} |
- blasr | 3 | {bio,bio-ngs} |
+ blasr | 3 | {bio-ngs,bio} |
busco | 3 | {covid-19,bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
@@ -74,7 +74,7 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
rambo-k | 3 | {bio} |
spread-phy | 3 | {bio,bio-phylogeny} |
staden | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
+ anfo | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
blimps | 2 | {bio} |
@@ -91,12 +91,12 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
logol | 2 | {bio} |
microbegps | 2 | {bio} |
pbdagcon | 2 | {bio} |
- perm | 2 | {cloud,bio} |
+ perm | 2 | {bio,cloud} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
python-wdlparse | 2 | {bio-dev} |
quorum | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ rtax | 2 | {bio,cloud} |
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
sambamba | 2 | {bio} |
@@ -109,14 +109,14 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
sprai | 2 | {bio} |
stacks | 2 | {bio} |
tvc | 2 | {bio} |
- vienna-rna | 2 | {covid-19,bio} |
+ vienna-rna | 2 | {bio,covid-19} |
yaha | 2 | {bio} |
zalign | 2 | {bio,cloud} |
- acedb | 1 | {cloud,bio} |
+ acedb | 1 | {bio,cloud} |
atropos | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
brig | 1 | {bio} |
- bustools | 1 | {bio,covid-19} |
+ bustools | 1 | {covid-19,bio} |
canu | 1 | {bio} |
clonalframeml | 1 | {covid-19,bio} |
cufflinks | 1 | {cloud,bio} |
@@ -127,27 +127,27 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
ipig | 1 | {bio} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
mauve-aligner | 1 | {bio} |
- mhap | 1 | {bio-ngs,bio} |
+ mhap | 1 | {bio,bio-ngs} |
nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
- oscar | 1 | {practice,data,tools} |
+ oscar | 1 | {data,practice,tools} |
papyrus | 1 | {imaging-dev} |
paraclu | 1 | {bio,cloud} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- pplacer | 1 | {bio-phylogeny,covid-19,bio} |
- prime-phylo | 1 | {bio,cloud} |
+ pplacer | 1 | {bio-phylogeny,bio,covid-19} |
+ prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
python-bcbio-gff | 1 | {bio-dev} |
@@ -162,15 +162,15 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
skewer | 1 | {bio} |
soapsnp | 1 | {bio} |
spaced | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
- yanagiba | 1 | {covid-19,bio} |
+ varscan | 1 | {covid-19,bio} |
+ yanagiba | 1 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -198,9 +198,9 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -224,9 +224,9 @@ Last-Update: Sun, 11 Apr 2021 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b63d103a4caf3b97044db73c980bee38babd8d2c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b63d103a4caf3b97044db73c980bee38babd8d2c
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