[med-svn] [Git][med-team/spades][master] 8 commits: routine-update: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / spades


Commits:
966e8383 by Andreas Tille at 2021-08-28T20:06:07+02:00
routine-update: Fix watchfile to detect new versions on github

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91efee88 by Andreas Tille at 2021-08-28T20:07:56+02:00
routine-update: New upstream version

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82063d64 by Andreas Tille at 2021-08-28T20:07:58+02:00
New upstream version 3.15.3+dfsg
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40e3b278 by Andreas Tille at 2021-08-28T20:08:40+02:00
Update upstream source from tag 'upstream/3.15.3+dfsg'

Update to upstream version '3.15.3+dfsg'
with Debian dir 3148263d0a5bf1c897cc7eadc0abb148c78d1baa
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3a47bda9 by Andreas Tille at 2021-08-28T20:08:41+02:00
routine-update: Standards-Version: 4.6.0

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bf31de4a by Andreas Tille at 2021-08-28T20:09:13+02:00
Remove constraints unnecessary since buster.

* Build-Depends: Drop versioned constraint on asciidoctor.

Changes-By: deb-scrub-obsolete
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6ebdc758 by Andreas Tille at 2021-08-28T20:12:01+02:00
Refresh patches

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86226c22 by Andreas Tille at 2021-08-28T20:18:27+02:00
Cleanup changelog

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30 changed files:

- README.md
- assembler/VERSION
- assembler/changelog.html
- assembler/configs/debruijn/config.info
- assembler/configs/debruijn/rna_mode.info
- − assembler/coronaspades.py
- + assembler/coronaspades.py
- assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c
- assembler/manual.html
- assembler/spades.py
- assembler/src/cmake/pack.cmake
- assembler/src/common/assembly_graph/dijkstra/dijkstra_helper.hpp
- assembler/src/common/assembly_graph/dijkstra/neighbours_iterator.hpp
- assembler/src/common/assembly_graph/paths/mapping_path.hpp
- assembler/src/common/io/dataset_support/dataset_readers.cpp
- assembler/src/common/io/dataset_support/dataset_readers.hpp
- assembler/src/common/io/dataset_support/read_converter.cpp
- assembler/src/common/io/reads/io_helper.cpp
- assembler/src/common/io/reads/io_helper.hpp
- assembler/src/common/io/reads/osequencestream.hpp
- assembler/src/common/math/xmath.h
- assembler/src/common/modules/alignment/long_read_mapper.cpp
- assembler/src/common/modules/alignment/pacbio/pac_index.hpp
- assembler/src/common/modules/chromosome_remover.cpp
- assembler/src/common/modules/path_extend/paired_library.hpp
- assembler/src/common/modules/path_extend/pipeline/extenders_logic.cpp
- assembler/src/common/modules/path_extend/pipeline/launcher.cpp
- assembler/src/common/paired_info/pair_info_filters.hpp
- assembler/src/common/pipeline/config_struct.cpp
- assembler/src/common/pipeline/config_struct.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/2ce1f0a2593da8233fd103ebfe80176d431ec1d0...86226c22c7088f62fe31372d7b0a36e24e72f2d9

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View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/2ce1f0a2593da8233fd103ebfe80176d431ec1d0...86226c22c7088f62fe31372d7b0a36e24e72f2d9
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