Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d6ba658c by Andreas Tille at 2021-06-10T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,108 +1,114 @@
-Last-Update: Thu, 10 Jun 2021 01:42:04 +0000
+Last-Update: Thu, 10 Jun 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 172 | {imaging,covid-19} |
- orthanc | 88 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ orthanc | 89 | {practice,imaging,covid-19} |
+ orthanc-wsi | 47 | {oncology,his,imaging,covid-19,practice,laboratory} |
gdcm | 41 | {imaging-dev} |
- dicom3tools | 29 | {imaging} |
+ dicom3tools | 30 | {imaging} |
amide | 28 | {imaging} |
- htsjdk | 25 | {bio-dev} |
+ htsjdk | 27 | {bio-dev} |
openslide | 25 | {imaging} |
dicomscope | 23 | {imaging} |
- dcm2niix | 20 | {imaging} |
+ dcm2niix | 21 | {imaging} |
minc-tools | 16 | {imaging} |
- adun.app | 14 | {bio} |
- invesalius | 14 | {imaging} |
+ adun.app | 15 | {bio} |
+ invesalius | 15 | {imaging} |
+ gdcm | 14 | {imaging,covid-19} |
+ gnumed-server | 14 | {covid-19,practice} |
odin | 14 | {imaging-dev,imaging} |
- gdcm | 13 | {imaging,covid-19} |
gdcm | 13 | {imaging-dev} |
- gnumed-server | 13 | {covid-19,practice} |
- dicomnifti | 11 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
- ngs-sdk | 11 | {bio-dev} |
- orthanc-webviewer | 11 | {imaging} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ dicomnifti | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
+ orthanc-webviewer | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
nifticlib | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
melting | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ nifti2dicom | 8 | {imaging} |
ea-utils | 7 | {bio} |
+ librg-utils-perl | 7 | {bio} |
+ mia | 7 | {imaging} |
nifti2dicom | 7 | {imaging} |
+ openslide | 7 | {imaging-dev} |
runcircos-gui | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
+ staden | 7 | {bio} |
+ biojava-live | 6 | {bio-dev} |
+ jebl2 | 6 | {bio-dev} |
king | 6 | {imaging,typesetting} |
- librg-utils-perl | 6 | {bio} |
- mia | 6 | {imaging} |
- ngs-sdk | 6 | {bio-dev} |
- nifti2dicom | 6 | {imaging} |
- openslide | 6 | {imaging-dev} |
stacks | 6 | {bio} |
- staden | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
- biojava-live | 5 | {bio-dev} |
- jebl2 | 5 | {bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ lagan | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
+ obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
+ saint | 5 | {bio} |
salmid | 5 | {bio} |
- bio-tradis | 4 | {bio-dev,bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ anfo | 4 | {cloud,bio} |
+ arden | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ bitseq | 4 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
elastix | 4 | {imaging} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
getdata | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- lagan | 4 | {bio} |
lamarc | 4 | {bio} |
- libminc | 4 | {imaging-dev} |
- obitools | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ libncl | 4 | {bio} |
+ nipype | 4 | {imaging,imaging-dev} |
orthanc-postgresql | 4 | {imaging} |
+ oscar | 4 | {tools,practice,data} |
+ phast | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
pymia | 4 | {imaging-dev} |
+ quorum | 4 | {bio} |
rdp-alignment | 4 | {bio} |
- saint | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
+ spaced | 4 | {bio} |
tracetuner | 4 | {bio} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- assemblytics | 3 | {bio} |
+ yaha | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- bitseq | 3 | {bio} |
- blasr | 3 | {bio,bio-ngs} |
+ biomaj3-cli | 3 | {cloud} |
canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
ecopcr | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
+ estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
ghmm | 3 | {bio} |
ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
- libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
logol | 3 | {bio} |
mauve-aligner | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
- nipype | 3 | {imaging,imaging-dev} |
- oscar | 3 | {tools,practice,data} |
+ nifticlib | 3 | {imaging-dev} |
paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
- phast | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
proalign | 3 | {bio-phylogeny,bio} |
- quorum | 3 | {bio} |
rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
rtax | 3 | {cloud,bio} |
@@ -111,21 +117,15 @@ Last-Update: Thu, 10 Jun 2021 01:42:04 +0000
sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
- spaced | 3 | {bio} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ tvc | 3 | {bio} |
bamkit | 2 | {bio,covid-19} |
- biomaj3-cli | 2 | {cloud} |
- clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
- estscan | 2 | {bio} |
hinge | 2 | {bio} |
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
- nifticlib | 2 | {imaging-dev} |
orthanc-gdcm | 2 | {imaging} |
orthanc-mysql | 2 | {imaging} |
plasmidseeker | 2 | {bio} |
@@ -133,7 +133,6 @@ Last-Update: Thu, 10 Jun 2021 01:42:04 +0000
qcumber | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
- tvc | 2 | {bio} |
atropos | 1 | {bio} |
blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
@@ -238,5 +237,5 @@ Last-Update: Thu, 10 Jun 2021 01:42:04 +0000
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
-(269 rows)
+(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d6ba658cd9f137de53f8142e8b7a2432fc96fee6
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d6ba658cd9f137de53f8142e8b7a2432fc96fee6
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