Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
91e11c50 by Andreas Tille at 2021-06-27T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,43 +1,41 @@
-Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
+Last-Update: Sun, 27 Jun 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 89 | {imaging,covid-19,practice} |
- orthanc-wsi | 45 | {oncology,laboratory,imaging,covid-19,his,practice} |
+ dcmtk | 172 | {covid-19,imaging} |
+ orthanc | 88 | {imaging,covid-19,practice} |
+ orthanc-wsi | 44 | {oncology,laboratory,imaging,covid-19,his,practice} |
gdcm | 39 | {imaging-dev} |
- htsjdk | 27 | {bio-dev} |
+ htsjdk | 26 | {bio-dev} |
amide | 24 | {imaging} |
openslide | 22 | {imaging} |
dicom3tools | 20 | {imaging} |
dicomscope | 19 | {imaging} |
dcm2niix | 17 | {imaging} |
+ odin | 15 | {imaging,imaging-dev} |
orthanc-webviewer | 15 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
- odin | 14 | {imaging,imaging-dev} |
adun.app | 13 | {bio} |
+ gdcm | 13 | {covid-19,imaging} |
gnumed-server | 13 | {practice,covid-19} |
- gdcm | 12 | {covid-19,imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
invesalius | 12 | {imaging} |
gdcm | 9 | {imaging-dev} |
minc-tools | 9 | {imaging} |
dicomnifti | 8 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
nifticlib | 8 | {imaging} |
- ea-utils | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
pixelmed | 7 | {imaging} |
- salmon | 7 | {covid-19,bio} |
busco | 6 | {bio,covid-19} |
+ ea-utils | 6 | {bio} |
jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
- melting | 6 | {cloud,bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
salmid | 6 | {bio} |
+ salmon | 6 | {covid-19,bio} |
biojava-live | 5 | {bio-dev} |
- bio-tradis | 5 | {bio,bio-dev} |
- dicompyler | 5 | {oncology} |
librg-utils-perl | 5 | {bio} |
+ melting | 5 | {cloud,bio} |
nifti2dicom | 5 | {imaging} |
nifticlib | 5 | {imaging-dev} |
openslide | 5 | {imaging-dev} |
@@ -45,17 +43,15 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
runcircos-gui | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
bitseq | 4 | {bio} |
- blasr | 4 | {bio,bio-ngs} |
+ dicompyler | 4 | {oncology} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
emboss-explorer | 4 | {bio} |
getdata | 4 | {bio} |
- king | 4 | {typesetting,imaging} |
- libdivsufsort | 4 | {bio-dev} |
mia | 4 | {imaging} |
ngs-sdk | 4 | {bio-dev} |
- obitools | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {tools,data,practice} |
@@ -68,6 +64,7 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
assemblytics | 3 | {bio} |
bamkit | 3 | {covid-19,bio} |
bart-view | 3 | {imaging} |
+ blasr | 3 | {bio,bio-ngs} |
brig | 3 | {bio} |
canu | 3 | {bio} |
clonalorigin | 3 | {bio} |
@@ -76,24 +73,24 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
jellyfish1 | 3 | {bio} |
+ king | 3 | {typesetting,imaging} |
lagan | 3 | {bio} |
lamarc | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
nipype | 3 | {imaging-dev,imaging} |
+ obitools | 3 | {bio} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
- pymia | 3 | {imaging-dev} |
quorum | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
spaced | 3 | {bio} |
stacks | 3 | {bio} |
- staden | 3 | {bio} |
tracetuner | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
@@ -116,8 +113,10 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
placnet | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
+ pymia | 2 | {imaging-dev} |
qcumber | 2 | {bio} |
rambo-k | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
rtax | 2 | {bio,cloud} |
sambamba | 2 | {bio} |
sga | 2 | {bio} |
@@ -125,6 +124,7 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
sprai | 2 | {bio} |
+ staden | 2 | {bio} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
tvc | 2 | {bio} |
@@ -132,17 +132,13 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
cat-bat | 1 | {bio,covid-19} |
delly | 1 | {bio,covid-19} |
hinge | 1 | {bio} |
- intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
metaphlan2 | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
- opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
@@ -153,7 +149,6 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- srf | 1 | {bio-dev} |
varscan | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
@@ -172,8 +167,10 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
+ intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
+ libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -182,6 +179,7 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -204,6 +202,7 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -226,6 +225,7 @@ Last-Update: Sun, 27 Jun 2021 01:42:04 +0000
simrisc | 0 | {oncology} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
+ srf | 0 | {bio-dev} |
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/91e11c5089523e38d4148b310b1ee376499d3b44
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/91e11c5089523e38d4148b310b1ee376499d3b44
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210627/43553aaf/attachment-0001.htm>