[med-svn] [Git][med-team/snpeff][master] 4 commits: Bringing corrections to the long description in d/control

[Pierre Gruet]

Pierre Gruet pushed to branch master at Debian Med / snpeff


Commits:
c5649574 by Pierre Gruet at 2021-03-30T12:25:30+02:00
Bringing corrections to the long description in d/control

- - - - -
3908bd80 by Pierre Gruet at 2021-03-30T17:06:13+02:00
Forwarding patches

- - - - -
d0c9d74f by Pierre Gruet at 2021-03-30T17:09:26+02:00
Adding ITP bug number

- - - - -
f0695d8d by Pierre Gruet at 2021-03-30T17:10:04+02:00
Merge branch 'master' of salsa.debian.org:med-team/snpeff

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/patches/adding_scala_in_pom.patch
- debian/patches/fix_tests.patch
- debian/patches/replacing_akka_with_java_util_concurrent.patch
- debian/patches/use_fastq_from_biojava4.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,5 @@
 snpeff (4.3t+dfsg1-1) UNRELEASED; urgency=medium
 
-  * Initial release (Closes: #<bug>)
+  * Initial release (Closes: #986141)
 
- -- Pierre Gruet <pgt at debian.org>  Wed, 17 Mar 2021 18:19:28 +0100
+ -- Pierre Gruet <pgt at debian.org>  Tue, 30 Mar 2021 16:39:35 +0200


=====================================
debian/control
=====================================
@@ -57,8 +57,7 @@ Description: genetic variant annotation and effect prediction toolbox - lib
  .
  SnpEff analyzes the input variants. It annotates the variants and
  calculates the effects they produce on known genes (e.g. amino acid
- changes). A list of effects and annotations that SnpEff can calculate
- can be found here.
+ changes).
  .
  This package contains the library.
 
@@ -78,8 +77,7 @@ Description: genetic variant annotation and effect prediction toolbox - tool
  .
  SnpEff analyzes the input variants. It annotates the variants and
  calculates the effects they produce on known genes (e.g. amino acid
- changes). A list of effects and annotations that SnpEff can calculate
- can be found here.
+ changes).
  .
  This package contains the command line tool.
 


=====================================
debian/patches/adding_scala_in_pom.patch
=====================================
@@ -1,6 +1,6 @@
 Description: Adding the scala library as a dependency
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: https://github.com/pcingola/SnpEff/issues/311
 Last-Update: 2020-12-04
 
 --- a/pom.xml


=====================================
debian/patches/fix_tests.patch
=====================================
@@ -2,7 +2,7 @@ Description: bringing corrections in failing tests
  Deactivating tests requiring files that do not exist.
  Correcting an assertEquals to care for tiny numerical differences.
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: https://github.com/pcingola/SnpEff/issues/310
 Last-Update: 2020-12-08
 
 --- a/src/main/java/org/snpeff/snpEffect/testCases/unity/TestCasesGenomicSequences.java


=====================================
debian/patches/replacing_akka_with_java_util_concurrent.patch
=====================================
@@ -1,6 +1,6 @@
 Description: replacing akka using java.util.concurrent
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: https://github.com/pcingola/SnpEff/issues/309
 Last-Update: 2020-12-04
 
 --- /dev/null


=====================================
debian/patches/use_fastq_from_biojava4.patch
=====================================
@@ -1,6 +1,6 @@
 Description: Using Fastq* classes from biojava4-live
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: not-needed
 Last-Update: 2021-03-16
 
 --- a/src/main/java/org/snpeff/Fastq2Fastq.java



View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/508aa8761b1e00e4eecdae86063c04fae34ca0fe...f0695d8da56e491fd8702bd28917f5803d97ee71

-- 
View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/508aa8761b1e00e4eecdae86063c04fae34ca0fe...f0695d8da56e491fd8702bd28917f5803d97ee71
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