Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2e9d8db8 by Andreas Tille at 2021-05-04T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,39 +1,41 @@
-Last-Update: Tue, 04 May 2021 01:42:04 +0000
+Last-Update: Tue, 04 May 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {covid-19,imaging} |
- orthanc | 91 | {covid-19,practice,imaging} |
+ dcmtk | 182 | {covid-19,imaging} |
+ orthanc | 93 | {covid-19,practice,imaging} |
orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
gdcm | 47 | {imaging-dev} |
openslide | 39 | {imaging} |
+ amide | 34 | {imaging} |
nipype | 34 | {imaging,imaging-dev} |
- amide | 32 | {imaging} |
htsjdk | 30 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
+ dicom3tools | 28 | {imaging} |
dicomscope | 28 | {imaging} |
dcm2niix | 20 | {imaging} |
odin | 19 | {imaging-dev,imaging} |
gdcm | 18 | {imaging-dev} |
ngs-sdk | 18 | {bio-dev} |
- gdcm | 16 | {covid-19,imaging} |
+ gdcm | 15 | {covid-19,imaging} |
invesalius | 15 | {imaging} |
gnumed-server | 13 | {practice,covid-19} |
- pixelmed | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
minc-tools | 12 | {imaging} |
- nifticlib | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
+ nifticlib | 11 | {imaging} |
+ orthanc-webviewer | 11 | {imaging} |
adun.app | 10 | {bio} |
- vtk-dicom | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
- orthanc-webviewer | 9 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
plastimatch | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
mia | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
dicompyler | 7 | {oncology} |
nifti2dicom | 7 | {imaging} |
bamkit | 6 | {covid-19,bio} |
librg-utils-perl | 6 | {bio} |
+ staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
blasr | 5 | {bio-ngs,bio} |
@@ -47,10 +49,13 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
- staden | 5 | {bio} |
busco | 4 | {covid-19,bio} |
ea-utils | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ obitools | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
+ orthanc-postgresql | 4 | {imaging} |
+ oscar | 4 | {data,practice,tools} |
plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
stacks | 4 | {bio} |
@@ -59,13 +64,9 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
- obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
- orthanc-postgresql | 3 | {imaging} |
- oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
saint | 3 | {bio} |
@@ -73,7 +74,6 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
anfo | 2 | {bio,cloud} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
biojava-live | 2 | {bio-dev} |
- biomaj3-cli | 2 | {cloud} |
bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
blimps | 2 | {bio} |
@@ -86,7 +86,6 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
- microbegps | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
phast | 2 | {bio} |
@@ -95,6 +94,7 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
placnet | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
qcumber | 2 | {bio} |
+ runcircos-gui | 2 | {bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
spaced | 2 | {bio} |
@@ -104,7 +104,9 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
tracetuner | 2 | {bio} |
acedb | 1 | {bio,cloud} |
arden | 1 | {cloud,bio} |
+ atropos | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
+ biomaj3-cli | 1 | {cloud} |
cat-bat | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
@@ -118,18 +120,16 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
- libchado-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
mauve-aligner | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
+ microbegps | 1 | {bio} |
orthanc-gdcm | 1 | {imaging} |
proalign | 1 | {bio,bio-phylogeny} |
- python-wdlparse | 1 | {bio-dev} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {bio,cloud} |
- runcircos-gui | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
@@ -141,7 +141,6 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
vtk-dicom | 1 | {imaging-dev} |
zalign | 1 | {bio,cloud} |
assemblytics | 0 | {bio} |
- atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -170,6 +169,7 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -209,8 +209,9 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
quorum | 0 | {bio} |
resfinder-db | 0 | {bio} |
@@ -238,5 +239,5 @@ Last-Update: Tue, 04 May 2021 01:42:04 +0000
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
-(268 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2e9d8db8be7f949bf98fda484476a5d7e7f42b67
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2e9d8db8be7f949bf98fda484476a5d7e7f42b67
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