Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ff453e75 by Andreas Tille at 2021-11-03T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,214 +1,212 @@
-Last-Update: Wed, 03 Nov 2021 01:42:03 +0000
+Last-Update: Wed, 03 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {covid-19,imaging} |
- orthanc | 100 | {imaging,covid-19,practice} |
- orthanc-wsi | 58 | {imaging,practice,his,covid-19,oncology,laboratory} |
- nipype | 33 | {imaging-dev,imaging} |
- gdcm | 29 | {imaging-dev} |
- htsjdk | 29 | {bio-dev} |
- amide | 25 | {imaging} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 102 | {imaging,covid-19,practice} |
+ orthanc-wsi | 55 | {imaging,covid-19,laboratory,oncology,practice,his} |
+ htsjdk | 30 | {bio-dev} |
+ nipype | 29 | {imaging,imaging-dev} |
+ gdcm | 27 | {imaging-dev} |
dicom3tools | 25 | {imaging} |
- dcm2niix | 23 | {imaging} |
- dicomscope | 19 | {imaging} |
- orthanc-webviewer | 17 | {imaging} |
- openslide | 16 | {imaging} |
- gdcm | 15 | {imaging-dev} |
- gdcm | 15 | {covid-19,imaging} |
- nifticlib | 15 | {imaging} |
- odin | 15 | {imaging-dev,imaging} |
- minc-tools | 14 | {imaging} |
- gnumed-server | 13 | {covid-19,practice} |
- invesalius | 13 | {imaging} |
- adun.app | 12 | {bio} |
- dicomnifti | 12 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
- pixelmed | 12 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
- orthanc-dicomweb | 9 | {covid-19,imaging} |
- libminc | 8 | {imaging-dev} |
- mia | 8 | {imaging} |
- nifticlib | 8 | {imaging-dev} |
+ amide | 24 | {imaging} |
+ openslide | 24 | {imaging} |
+ mrtrix3 | 23 | {imaging} |
+ dicomscope | 22 | {imaging} |
+ odin | 20 | {imaging-dev,imaging} |
+ invesalius | 19 | {imaging} |
+ dcm2niix | 16 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ orthanc-webviewer | 15 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
+ gdcm | 12 | {covid-19,imaging} |
+ gnumed-server | 12 | {covid-19,practice} |
+ dicomnifti | 11 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ ngs-sdk | 11 | {bio-dev} |
+ nifticlib | 11 | {imaging} |
+ pixelmed | 11 | {imaging} |
+ adun.app | 10 | {bio} |
+ nifti2dicom | 10 | {imaging} |
+ mia | 9 | {imaging} |
+ salmon | 9 | {covid-19,bio} |
+ orthanc-dicomweb | 8 | {covid-19,imaging} |
+ plastimatch | 8 | {imaging} |
king | 7 | {imaging,typesetting} |
- mrtrix3 | 7 | {imaging} |
+ libminc | 7 | {imaging-dev} |
ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- orthanc-postgresql | 7 | {imaging} |
- plastimatch | 7 | {imaging} |
- biojava-live | 6 | {bio-dev} |
jebl2 | 6 | {bio-dev} |
- libdivsufsort | 6 | {bio-dev} |
- nifti2dicom | 6 | {imaging} |
+ lagan | 6 | {bio} |
+ orthanc-gdcm | 6 | {imaging} |
orthanc-mysql | 6 | {imaging} |
- jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
+ orthanc-postgresql | 6 | {imaging} |
+ oscar | 6 | {tools,data,practice} |
+ sight | 6 | {imaging} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ bart-view | 5 | {imaging} |
+ biojava-live | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
- orthanc-gdcm | 5 | {imaging} |
- oscar | 5 | {tools,data,practice} |
- salmon | 5 | {bio,covid-19} |
- treeview | 5 | {bio-phylogeny,bio} |
- atropos | 4 | {bio} |
- bart-view | 4 | {imaging} |
- embassy-domainatrix | 4 | {cloud,bio} |
+ nifticlib | 5 | {imaging-dev} |
+ dicompyler | 4 | {oncology} |
+ fsm-lite | 4 | {bio} |
+ getdata | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
- orthanc-python | 4 | {covid-19} |
- papyrus | 4 | {imaging-dev} |
- phyutility | 4 | {bio,cloud} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ melting | 4 | {bio,cloud} |
+ phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
- pymia | 4 | {imaging-dev} |
- sight | 4 | {imaging} |
+ rdp-classifier | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
stacks | 4 | {bio} |
- tracetuner | 4 | {bio} |
anfo | 3 | {bio,cloud} |
- bitseq | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ brig | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
- emmax | 3 | {bio} |
fastml | 3 | {bio} |
gatb-core | 3 | {bio} |
- getdata | 3 | {bio} |
ghmm | 3 | {bio} |
- pbdagcon | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
+ ipig | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libmuscle | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
+ mauve-aligner | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
+ microbegps | 3 | {bio} |
+ ncbi-vdb | 3 | {bio-dev} |
+ opencfu | 3 | {laboratory} |
+ openslide | 3 | {imaging-dev} |
+ orthanc-python | 3 | {covid-19} |
+ placnet | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ pymia | 3 | {imaging-dev} |
+ rambo-k | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
sibsim4 | 3 | {cloud,bio} |
- sprai | 3 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
+ spread-phy | 3 | {bio-phylogeny,bio} |
+ arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ bambamc | 2 | {bio-dev} |
bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
- clonalorigin | 2 | {bio} |
- dextractor | 2 | {bio,covid-19} |
- dicompyler | 2 | {oncology} |
- fsm-lite | 2 | {bio} |
+ canu | 2 | {bio} |
+ clonalframeml | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
+ dextractor | 2 | {covid-19,bio} |
+ gatb-core | 2 | {bio-dev} |
gifticlib | 2 | {imaging-dev} |
- ipig | 2 | {bio} |
- lamarc | 2 | {bio} |
+ hinge | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- melting | 2 | {cloud,bio} |
- metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
- microbegps | 2 | {bio} |
+ libbpp-core | 2 | {bio-dev} |
+ libbpp-phyl | 2 | {bio-dev} |
+ libbpp-phyl-omics | 2 | {bio-dev} |
+ libbpp-popgen | 2 | {bio-dev} |
+ libbpp-raa | 2 | {bio-dev} |
+ libbpp-seq | 2 | {bio-dev} |
+ libbpp-seq-omics | 2 | {bio-dev} |
+ libgenome | 2 | {bio-dev} |
+ libgkarrays | 2 | {bio-dev} |
+ libhmsbeagle | 2 | {bio-dev} |
+ libmems | 2 | {bio-dev} |
+ libpal-java | 2 | {bio-dev} |
+ libqes | 2 | {bio-dev} |
+ libseqlib | 2 | {bio-dev} |
+ libstatgen | 2 | {bio-dev} |
obitools | 2 | {bio} |
+ papyrus | 2 | {imaging-dev} |
+ parallel-fastq-dump | 2 | {covid-19} |
+ pbcopper | 2 | {bio-dev} |
+ pbseqlib | 2 | {bio-dev} |
phast | 2 | {bio} |
- placnet | 2 | {bio} |
- plasmidid | 2 | {covid-19,bio} |
- plasmidseeker | 2 | {bio} |
- rambo-k | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ rdp-alignment | 2 | {bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
+ sprai | 2 | {bio} |
srf | 2 | {bio-dev} |
staden | 2 | {bio} |
suitename | 2 | {bio} |
+ tracetuner | 2 | {bio} |
+ varna | 2 | {bio} |
zalign | 2 | {cloud,bio} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- bbmap | 1 | {bio,covid-19} |
+ atropos | 1 | {bio} |
biomaj3-cli | 1 | {cloud} |
- bustools | 1 | {bio,covid-19} |
- canu | 1 | {bio} |
- clonalframeml | 1 | {covid-19,bio} |
- delly | 1 | {bio,covid-19} |
- hinge | 1 | {bio} |
- intake | 1 | {bio-dev,bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
+ bustools | 1 | {covid-19,bio} |
+ ctn | 1 | {imaging-dev} |
+ cufflinks | 1 | {bio,cloud} |
+ emmax | 1 | {bio} |
+ htscodecs | 1 | {covid-19,bio-dev} |
+ intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
+ libbigwig | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
- libctapimkt | 1 | {practice} |
- libhmsbeagle | 1 | {bio-dev} |
- libmuscle | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
+ libncl | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- opencfu | 1 | {laboratory} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
- proalign | 1 | {bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
- python-wdlparse | 1 | {bio-dev} |
- rdp-alignment | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ shovill | 1 | {covid-19,bio} |
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
tvc | 1 | {bio} |
- varna | 1 | {bio} |
- acedb | 0 | {bio,cloud} |
- bambamc | 0 | {bio-dev} |
+ acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
- libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libbpp-core | 0 | {bio-dev} |
- libbpp-phyl | 0 | {bio-dev} |
- libbpp-phyl-omics | 0 | {bio-dev} |
- libbpp-popgen | 0 | {bio-dev} |
- libbpp-raa | 0 | {bio-dev} |
- libbpp-seq | 0 | {bio-dev} |
- libbpp-seq-omics | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
- libgkarrays | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libctapimkt | 0 | {practice} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
- libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
- libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
- libqes | 0 | {bio-dev} |
- libseqlib | 0 | {bio-dev} |
- libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
- mssstest | 0 | {tools} |
- ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- parallel-fastq-dump | 0 | {covid-19} |
- pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- qcumber | 0 | {bio} |
+ python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
- sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
- vienna-rna | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
- python-seqcluster | -1 | {bio} |
-(241 rows)
+ mssstest | -1 | {tools} |
+ sight | -1 | {imaging-dev} |
+(238 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff453e75a7a111e0bf8680b2f01660773e324d1b
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