[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Nov 21 03:58:56 GMT 2021



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
98c41d20 by Andreas Tille at 2021-11-21T03:58:51+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,214 +1,2 @@
-Last-Update: Sat, 20 Nov 2021 13:42:04 +0000
-
- Source                        | Vote   |     Tasks                                           |                                 Tags                                 
--------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    192 | {imaging,covid-19}                                  | 
- orthanc                       |    103 | {covid-19,imaging,practice}                         | 
- orthanc-wsi                   |     60 | {oncology,his,laboratory,imaging,covid-19,practice} | 
- htsjdk                        |     32 | {bio-dev}                                           | 
- nipype                        |     32 | {imaging-dev,imaging}                               | 
- amide                         |     31 | {imaging}                                           | 
- mrtrix3                       |     28 | {imaging}                                           | 
- dicom3tools                   |     26 | {imaging}                                           | 
- dicomscope                    |     24 | {imaging}                                           | 
- gdcm                          |     23 | {imaging-dev}                                       | 
- openslide                     |     21 | {imaging}                                           | 
- dcm2niix                      |     20 | {imaging}                                           | 
- invesalius                    |     18 | {imaging}                                           | 
- ngs-sdk                       |     18 | {bio-dev}                                           | 
- odin                          |     18 | {imaging,imaging-dev}                               | 
- gnumed-server                 |     16 | {covid-19,practice}                                 | 
- orthanc-webviewer             |     15 | {imaging}                                           | 
- gdcm                          |     14 | {covid-19,imaging}                                  | 
- gdcm                          |     14 | {imaging-dev}                                       | 
- dicomnifti                    |     13 | {imaging}                                           | 
- insighttoolkit4               |     13 | {imaging-dev}                                       | 
- minc-tools                    |     13 | {imaging}                                           | 
- nifticlib                     |     12 | {imaging}                                           | 
- nifti2dicom                   |     11 | {imaging}                                           | 
- adun.app                      |     10 | {bio}                                               | 
- libminc                       |      9 | {imaging-dev}                                       | 
- ngs-sdk                       |      9 | {bio-dev}                                           | 
- pixelmed                      |      9 | {imaging}                                           | 
- salmon                        |      9 | {bio,covid-19}                                      | 
- king                          |      8 | {typesetting,imaging}                               | 
- ngs-sdk                       |      8 | {bio-dev}                                           | 
- nifti2dicom                   |      8 | {imaging}                                           | 
- nifticlib                     |      8 | {imaging-dev}                                       | 
- oscar                         |      8 | {data,practice,tools}                               | 
- lagan                         |      7 | {bio}                                               | 
- mia                           |      7 | {imaging}                                           | 
- orthanc-dicomweb              |      7 | {imaging,covid-19}                                  | 
- plastimatch                   |      7 | {imaging}                                           | 
- biojava-live                  |      5 | {bio-dev}                                           | 
- getdata                       |      5 | {bio}                                               | 
- jebl2                         |      5 | {bio-dev}                                           | 
- libncl                        |      5 | {bio}                                               | 
- openslide                     |      5 | {imaging-dev}                                       | 
- orthanc-mysql                 |      5 | {imaging}                                           | 
- orthanc-postgresql            |      5 | {imaging}                                           | 
- runcircos-gui                 |      5 | {bio}                                               | 
- treeview                      |      5 | {bio,bio-phylogeny}                                 | 
- bart-view                     |      4 | {imaging}                                           | 
- gifticlib                     |      4 | {imaging-dev}                                       | 
- libdivsufsort                 |      4 | {bio-dev}                                           | 
- librg-utils-perl              |      4 | {bio}                                               | 
- melting                       |      4 | {cloud,bio}                                         | 
- orthanc-gdcm                  |      4 | {imaging}                                           | 
- papyrus                       |      4 | {imaging-dev}                                       | 
- pymia                         |      4 | {imaging-dev}                                       | 
- rambo-k                       |      4 | {bio}                                               | 
- srf                           |      4 | {bio-dev}                                           | 
- stacks                        |      4 | {bio}                                               | 
- beast-mcmc                    |      3 | {bio-phylogeny,bio}                                 | 
- brig                          |      3 | {bio}                                               | 
- canu                          |      3 | {bio}                                               | 
- clonalorigin                  |      3 | {bio}                                               | 
- cmtk                          |      3 | {imaging}                                           | 
- elastix                       |      3 | {imaging}                                           | 
- embassy-domainatrix           |      3 | {cloud,bio}                                         | 
- embassy-domalign              |      3 | {bio,cloud}                                         | 
- emboss-explorer               |      3 | {bio}                                               | 
- ghmm                          |      3 | {bio}                                               | 
- jellyfish1                    |      3 | {bio}                                               | 
- lamarc                        |      3 | {bio}                                               | 
- libsbml                       |      3 | {bio-dev}                                           | 
- obitools                      |      3 | {bio}                                               | 
- orthanc-python                |      3 | {covid-19}                                          | 
- phyutility                    |      3 | {cloud,bio}                                         | 
- piler                         |      3 | {bio}                                               | 
- plasmidseeker                 |      3 | {bio}                                               | 
- saint                         |      3 | {bio}                                               | 
- anfo                          |      2 | {cloud,bio}                                         | 
- arden                         |      2 | {cloud,bio}                                         | 
- assemblytics                  |      2 | {bio}                                               | 
- bitseq                        |      2 | {bio}                                               | 
- cat-bat                       |      2 | {covid-19,bio}                                      | 
- clonalframeml                 |      2 | {bio,covid-19}                                      | 
- delly                         |      2 | {covid-19,bio}                                      | 
- embassy-domsearch             |      2 | {cloud,bio}                                         | 
- fastml                        |      2 | {bio}                                               | 
- fsm-lite                      |      2 | {bio}                                               | 
- gatb-core                     |      2 | {bio}                                               | 
- hinge                         |      2 | {bio}                                               | 
- ipig                          |      2 | {bio}                                               | 
- libpal-java                   |      2 | {bio-dev}                                           | 
- librdp-taxonomy-tree-java     |      2 | {bio-dev}                                           | 
- mauve-aligner                 |      2 | {bio}                                               | 
- metaphlan2                    |      2 | {bio}                                               | 
- mhap                          |      2 | {bio,bio-ngs}                                       | 
- microbegps                    |      2 | {bio}                                               | 
- opencfu                       |      2 | {laboratory}                                        | 
- pigx-rnaseq                   |      2 | {bio,covid-19}                                      | 
- placnet                       |      2 | {bio}                                               | 
- proalign                      |      2 | {bio-phylogeny,bio}                                 | 
- rdp-classifier                |      2 | {bio}                                               | 
- rtax                          |      2 | {cloud,bio}                                         | 
- sibsim4                       |      2 | {bio,cloud}                                         | 
- spread-phy                    |      2 | {bio,bio-phylogeny}                                 | 
- tracetuner                    |      2 | {bio}                                               | 
- varna                         |      2 | {bio}                                               | 
- zalign                        |      2 | {bio,cloud}                                         | 
- atropos                       |      1 | {bio}                                               | 
- bambamc                       |      1 | {bio-dev}                                           | 
- biomaj3-cli                   |      1 | {cloud}                                             | 
- bio-tradis                    |      1 | {bio-dev,bio}                                       | 
- blimps                        |      1 | {bio}                                               | 
- bmtk                          |      1 | {psychology}                                        | 
- ctn                           |      1 | {imaging-dev}                                       | 
- dextractor                    |      1 | {covid-19,bio}                                      | 
- dicompyler                    |      1 | {oncology}                                          | 
- emmax                         |      1 | {bio}                                               | 
- gatb-core                     |      1 | {bio-dev}                                           | 
- intake                        |      1 | {bio,bio-dev}                                       | 
- jmodeltest                    |      1 | {bio,bio-phylogeny}                                 | 
- kmerresistance                |      1 | {bio}                                               | 
- libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
- libbpp-core                   |      1 | {bio-dev}                                           | 
- libbpp-phyl                   |      1 | {bio-dev}                                           | 
- libbpp-phyl-omics             |      1 | {bio-dev}                                           | 
- libbpp-popgen                 |      1 | {bio-dev}                                           | 
- libbpp-raa                    |      1 | {bio-dev}                                           | 
- libbpp-seq                    |      1 | {bio-dev}                                           | 
- libbpp-seq-omics              |      1 | {bio-dev}                                           | 
- libchado-perl                 |      1 | {bio-dev}                                           | 
- libgenome                     |      1 | {bio-dev}                                           | 
- libgkarrays                   |      1 | {bio-dev}                                           | 
- libhmsbeagle                  |      1 | {bio-dev}                                           | 
- libics                        |      1 | {imaging-dev,covid-19}                              | 
- libmems                       |      1 | {bio-dev}                                           | 
- libmuscle                     |      1 | {bio-dev}                                           | 
- libncl                        |      1 | {bio-dev}                                           | 
- libqes                        |      1 | {bio-dev}                                           | 
- libseqlib                     |      1 | {bio-dev}                                           | 
- libstatgen                    |      1 | {bio-dev}                                           | 
- libvistaio                    |      1 | {imaging-dev}                                       | 
- ncbi-vdb                      |      1 | {bio-dev}                                           | 
- parallel-fastq-dump           |      1 | {covid-19}                                          | 
- pbseqlib                      |      1 | {bio-dev}                                           | 
- pique                         |      1 | {bio}                                               | 
- plasmidid                     |      1 | {bio,covid-19}                                      | 
- pplacer                       |      1 | {covid-19,bio,bio-phylogeny}                        | 
- pscan-chip                    |      1 | {bio}                                               | 
- qcumber                       |      1 | {bio}                                               | 
- rdp-alignment                 |      1 | {bio}                                               | 
- sga                           |      1 | {bio}                                               | 
- shovill                       |      1 | {covid-19,bio}                                      | 
- sift                          |      1 | {bio}                                               | 
- skesa                         |      1 | {bio}                                               | 
- soapaligner                   |      1 | {bio}                                               | 
- soapsnp                       |      1 | {bio}                                               | 
- spaln                         |      1 | {bio,covid-19}                                      | 
- sprai                         |      1 | {bio}                                               | 
- staden                        |      1 | {bio}                                               | 
- suitename                     |      1 | {bio}                                               | 
- surankco                      |      1 | {bio}                                               | 
- thesias                       |      1 | {covid-19,bio}                                      | 
- tophat-recondition            |      1 | {bio,covid-19}                                      | 
- tvc                           |      1 | {bio}                                               | 
- acedb                         |      0 | {cloud,bio}                                         | 
- biojava4-live                 |      0 | {bio-dev}                                           | 
- biosyntax                     |      0 | {bio}                                               | 
- camp                          |      0 | {imaging-dev}                                       | 
- cufflinks                     |      0 | {cloud,bio}                                         | 
- cutesv                        |      0 | {bio}                                               | 
- eegdev                        |      0 | {imaging-dev}                                       | 
- emperor                       |      0 | {bio}                                               | 
- fis-gtm                       |      0 | {his}                                               | 
- htscodecs                     |      0 | {covid-19,bio-dev}                                  | 
- libbigwig                     |      0 | {bio-dev}                                           | 
- libbiod                       |      0 | {bio-dev}                                           | 
- libbioparser-dev              |      0 | {bio-dev}                                           | 
- libctapimkt                   |      0 | {practice}                                          | 
- libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
- libmialm                      |      0 | {imaging-dev}                                       | 
- libpsortb                     |      0 | {bio-dev}                                           | 
- libxdf                        |      0 | {imaging-dev}                                       | 
- metastudent-data              |      0 | {bio}                                               | 
- metastudent-data-2            |      0 | {bio}                                               | 
- mia                           |      0 | {imaging-dev}                                       | 
- miaviewit                     |      0 | {imaging-dev}                                       | 
- milib                         |      0 | {bio-dev,covid-19}                                  | 
- nifticlib                     |      0 | {imaging-dev}                                       | 
- opensurgsim                   |      0 | {imaging-dev}                                       | 
- orthanc-imagej                |      0 | {imaging}                                           | 
- pbcopper                      |      0 | {bio-dev}                                           | 
- pbseqlib                      |      0 | {bio-dev}                                           | 
- python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
- python-seqcluster             |      0 | {bio}                                               | 
- python-wdlparse               |      0 | {bio-dev}                                           | 
- resfinder-db                  |      0 | {bio}                                               | 
- sbmltoolbox                   |      0 | {bio-dev}                                           | 
- seq-gen                       |      0 | {bio}                                               | 
- sight                         |      0 | {imaging-dev}                                       | 
- simpleitk                     |      0 | {imaging-dev}                                       | 
- smrtanalysis                  |      0 | {bio,covid-19}                                      | 
- trace2dbest                   |      0 | {bio}                                               | 
- varscan                       |      0 | {bio,covid-19}                                      | 
- vienna-rna                    |      0 | {bio,covid-19}                                      | 
- xdffileio                     |      0 | {imaging-dev}                                       | 
- mssstest                      |     -1 | {tools}                                             | 
- tipp                          |     -1 | {bio,covid-19}                                      | 
-(240 rows)
+Last-Update: Sun, 21 Nov 2021 01:42:04 +0000
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/98c41d20de8b40f591863fd78c5cdfae6610040d

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