[med-svn] [Git][med-team/libbpp-seq][master] 5 commits: Fix watchfile to detect new versions on github
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Oct 11 09:47:46 BST 2021
Andreas Tille pushed to branch master at Debian Med / libbpp-seq
Commits:
68d93048 by Andreas Tille at 2021-10-11T10:25:09+02:00
Fix watchfile to detect new versions on github
- - - - -
61797c79 by Andreas Tille at 2021-10-11T10:25:54+02:00
routine-update: Standards-Version: 4.6.0
- - - - -
96ef682d by Andreas Tille at 2021-10-11T10:35:16+02:00
Fix ftbfs with gcc-11
- - - - -
2e55a1c2 by Andreas Tille at 2021-10-11T10:35:29+02:00
Drip unneeded versioned Build-Depends
- - - - -
eb8fb139 by Andreas Tille at 2021-10-11T10:38:11+02:00
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/libbpp-seq12.symbols.amd64
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+libbpp-seq (2.4.1-6) unstable; urgency=medium
+
+ * Fix watchfile to detect new versions on github
+ * Standards-Version: 4.6.0 (routine-update)
+ * Fix ftbfs with gcc-11
+ Closes: #984094
+
+ -- Andreas Tille <tille at debian.org> Mon, 11 Oct 2021 10:35:48 +0200
+
libbpp-seq (2.4.1-5) unstable; urgency=medium
* Standards-Version: 4.5.0 (routine-update)
=====================================
debian/control
=====================================
@@ -6,9 +6,9 @@ Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
cmake,
- d-shlibs (>= 0.80),
- libbpp-core-dev (>= 2.4.1)
-Standards-Version: 4.5.0
+ d-shlibs,
+ libbpp-core-dev
+Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq
Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
@@ -19,7 +19,7 @@ Architecture: any
Section: libdevel
Depends: libbpp-seq12 (= ${binary:Version}),
${misc:Depends},
- libbpp-core-dev (>= 2.4.1)
+ libbpp-core-dev
Description: Bio++ Sequence library development files
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
=====================================
debian/libbpp-seq12.symbols.amd64
=====================================
@@ -12,6 +12,7 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp10NexusTools21getNextNonCommentLineB5cxx11ERSi at Base 2.4.1
_ZN3bpp11AAMassIndexD0Ev at Base 2.4.1
_ZN3bpp11AAMassIndexD1Ev at Base 2.4.1
+ _ZN3bpp11GeneticCodeC2ERKS0_ at Base 2.4.1
_ZN3bpp11GeneticCodeD2Ev at Base 2.4.1
_ZN3bpp11IOExceptionD0Ev at Base 2.4.1
_ZN3bpp11IOExceptionD1Ev at Base 2.4.1
@@ -1830,8 +1831,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 2.4.1
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEC1ERKSE_ at Base 2.4.1
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEC2ERKSE_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St4fposI11__mbstate_tEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St4fposI11__mbstate_tEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St4fposI11__mbstate_tEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E at Base 2.4.1
@@ -1844,15 +1843,11 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEC1ERKSE_ at Base 2.4.1
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEC2ERKSE_ at Base 2.4.1
_ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
- _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EEC1ERKS8_ at Base 2.4.1
- _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EEC2ERKS8_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
@@ -1860,12 +1855,8 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EEC1ERKS8_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EEC2ERKS8_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EEC1ERKS8_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EEC2ERKS8_ at Base 2.4.1
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_ at Base 2.4.1
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
@@ -2339,6 +2330,7 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZTVN3bpp14AASurfaceIndexE at Base 2.4.1
_ZTVN3bpp14BinaryAlphabetE at Base 2.4.1
_ZTVN3bpp14DistanceMatrixE at Base 2.4.1
+ _ZTVN3bpp14TransliteratorE at Base 2.4.1
_ZTVN3bpp15AASEAInf10IndexE at Base 2.4.1
_ZTVN3bpp15AASEASup30IndexE at Base 2.4.1
_ZTVN3bpp15BadIntExceptionE at Base 2.4.1
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
version=4
-https://github.com/BioPP/bpp-seq/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+https://github.com/BioPP/bpp-seq/releases .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/compare/4f6045c406e426f68912fac625f16bf674f57e35...eb8fb1395c30ab4271998928dd444c9693d51e5c
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/compare/4f6045c406e426f68912fac625f16bf674f57e35...eb8fb1395c30ab4271998928dd444c9693d51e5c
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