[med-svn] [Git][med-team/racon][master] 7 commits: routine-update: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / racon


Commits:
4fa02681 by Andreas Tille at 2021-09-01T17:17:06+02:00
routine-update: Fix watchfile to detect new versions on github

- - - - -
683c68cf by Andreas Tille at 2021-09-01T17:17:12+02:00
New upstream version 1.4.21
- - - - -
568ee915 by Andreas Tille at 2021-09-01T17:17:12+02:00
routine-update: New upstream version

- - - - -
d891cfbd by Andreas Tille at 2021-09-01T17:17:15+02:00
Update upstream source from tag 'upstream/1.4.21'

Update to upstream version '1.4.21'
with Debian dir b9a729ac5edde3460591175ea7b8842e4090b0e7
- - - - -
ed34782f by Andreas Tille at 2021-09-01T17:17:15+02:00
routine-update: Standards-Version: 4.6.0

- - - - -
e1b4913a by Andreas Tille at 2021-09-01T17:17:27+02:00
Remove constraints unnecessary since buster.

* Build-Depends: Drop versioned constraint on libbioparser-dev.

Changes-By: deb-scrub-obsolete
- - - - -
863a7083 by Andreas Tille at 2021-09-01T17:26:22+02:00
routine-update: Ready to upload to unstable

- - - - -


6 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- debian/watch
- src/polisher.cpp
- test/racon_test.cpp


Changes:

=====================================
CMakeLists.txt
=====================================
@@ -1,6 +1,6 @@
 cmake_minimum_required(VERSION 3.2)
 project(racon)
-set(racon_version 1.4.20)
+set(racon_version 1.4.21)
 
 set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
 set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)


=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+racon (1.4.21-1) unstable; urgency=medium
+
+  * Fix watchfile to detect new versions on github (routine-update)
+  * New upstream version
+  * Standards-Version: 4.6.0 (routine-update)
+  * Remove constraints unnecessary since buster:
+    + Build-Depends: Drop versioned constraint on libbioparser-dev.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 01 Sep 2021 17:17:28 +0200
+
 racon (1.4.20-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -7,13 +7,13 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
                cmake,
                libgtest-dev,
-               libbioparser-dev (>= 3.0.12),
+               libbioparser-dev,
                libcereal-dev,
                libedlib-dev,
                libspoa-dev,
                libthread-pool-dev (>= 3.0.2),
                rampler
-Standards-Version: 4.5.1
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/racon
 Vcs-Git: https://salsa.debian.org/med-team/racon.git
 Homepage: https://github.com/lbcb-sci/racon


=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
 version=4
 
-https://github.com/lbcb-sci/racon/releases .*/archive/@ANY_VERSION@@ARCHIVE_EXT@
+https://github.com/lbcb-sci/racon/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz


=====================================
src/polisher.cpp
=====================================
@@ -299,7 +299,7 @@ void Polisher::initialize() {
                     if (overlaps[j] == nullptr) {
                         continue;
                     }
-                    if (overlaps[i]->length() > overlaps[j]->length()) {
+                    if (overlaps[i]->length() >= overlaps[j]->length()) {
                         overlaps[j].reset();
                     } else {
                         overlaps[i].reset();


=====================================
test/racon_test.cpp
=====================================
@@ -233,13 +233,13 @@ TEST_F(RaconPolishingTest, FragmentCorrectionWithQualities) {
 
     std::vector<std::unique_ptr<racon::Sequence>> polished_sequences;
     polish(polished_sequences, true);
-    EXPECT_EQ(polished_sequences.size(), 39);
+    EXPECT_EQ(polished_sequences.size(), 40);
 
     uint32_t total_length = 0;
     for (const auto& it : polished_sequences) {
         total_length += it->data().size();
     }
-    EXPECT_EQ(total_length, 389394);
+    EXPECT_EQ(total_length, 401246);
 }
 
 TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesFull) {
@@ -444,13 +444,13 @@ TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesCUDA) {
 
     std::vector<std::unique_ptr<racon::Sequence>> polished_sequences;
     polish(polished_sequences, true);
-    EXPECT_EQ(polished_sequences.size(), 39);
+    EXPECT_EQ(polished_sequences.size(), 40);
 
     uint32_t total_length = 0;
     for (const auto& it : polished_sequences) {
         total_length += it->data().size();
     }
-    EXPECT_EQ(total_length, 385543);  // CPU 389394
+    EXPECT_EQ(total_length, 397185);  // CPU 389394
 }
 
 TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesFullCUDA) {



View it on GitLab: https://salsa.debian.org/med-team/racon/-/compare/4230779c2ac5ee57938f9d776fc6c57880279384...863a708321972722822b0ce4ddecfd6499dcb31c

-- 
View it on GitLab: https://salsa.debian.org/med-team/racon/-/compare/4230779c2ac5ee57938f9d776fc6c57880279384...863a708321972722822b0ce4ddecfd6499dcb31c
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