[med-svn] [Git][med-team/bowtie2][master] 9 commits: prep for update

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / bowtie2


Commits:
671a62e0 by Michael R. Crusoe at 2021-09-13T18:38:05+02:00
prep for update

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b49c11be by Michael R. Crusoe at 2021-09-13T18:38:17+02:00
routine-update: Fix watchfile to detect new versions on github

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ab957f55 by Michael R. Crusoe at 2021-09-13T18:38:19+02:00
routine-update: New upstream version

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b1b4187f by Michael R. Crusoe at 2021-09-13T18:38:20+02:00
New upstream version 2.4.4
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b6f6e46b by Michael R. Crusoe at 2021-09-13T18:38:38+02:00
Update upstream source from tag 'upstream/2.4.4'

Update to upstream version '2.4.4'
with Debian dir 1f0c94300dbd49df3da4e08187c0ed18a34a6693
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e042b6d5 by Michael R. Crusoe at 2021-09-13T18:38:39+02:00
routine-update: Standards-Version: 4.6.0

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137ce265 by Michael R. Crusoe at 2021-09-13T18:46:32+02:00
Refresh patches

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1564432f by Michael R. Crusoe at 2021-09-13T19:00:37+02:00
no more tinythread, it seems

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a26af0e2 by Michael R. Crusoe at 2021-09-13T19:00:37+02:00
routine-update: Ready to upload to unstable

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18 changed files:

- + .github/workflows/bowtie2.yml
- .gitmodules
- .travis.yml
- BOWTIE2_VERSION
- CMakeLists.txt
- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- README.md
- aligner_cache.cpp
- aligner_cache.h
- aligner_seed.h
- aligner_sw_common.h
- aligner_swsse_ee_u8.cpp
- aligner_swsse_loc_u8.cpp
- aln_sink.h
- blockwise_sa.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/1dd8cdbe6e754128e3fa95463f2eb7b3923379d8...a26af0e2d88ccfb7e65b80d82684c33c8c7d8db7

-- 
View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/1dd8cdbe6e754128e3fa95463f2eb7b3923379d8...a26af0e2d88ccfb7e65b80d82684c33c8c7d8db7
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