[med-svn] [Git][med-team/libstatgen][master] 7 commits: routine-update: Packaging update
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Aug 4 14:05:00 BST 2022
Andreas Tille pushed to branch master at Debian Med / libstatgen
Commits:
fab58fc4 by Andreas Tille at 2022-08-04T14:15:27+02:00
routine-update: Packaging update
- - - - -
04d2b2e0 by Andreas Tille at 2022-08-04T14:15:27+02:00
routine-update: Standards-Version: 4.6.1
- - - - -
eeb01526 by Andreas Tille at 2022-08-04T14:21:15+02:00
Fix symbols file to match gcc-12 build
- - - - -
7f8d9c76 by Andreas Tille at 2022-08-04T14:35:09+02:00
Some more missings that do not work with dh_makeshlibs patch and were removed manually
- - - - -
3f23f743 by Andreas Tille at 2022-08-04T14:52:08+02:00
Another manual intervention into symbols file where dh_makeshlibs patch does not apply
- - - - -
9c42c229 by Andreas Tille at 2022-08-04T14:59:01+02:00
More manual symbols changes needed
- - - - -
65d2398c by Andreas Tille at 2022-08-04T15:00:50+02:00
Upload to unstable
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/libstatgen1.symbols
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+libstatgen (1.0.15-6) unstable; urgency=medium
+
+ * Team upload.
+ * Packaging update
+ * Standards-Version: 4.6.1 (routine-update)
+ * Fix symbols file to match gcc-12 build
+ Closes: #1016297
+
+ -- Andreas Tille <tille at debian.org> Thu, 04 Aug 2022 14:59:25 +0200
+
libstatgen (1.0.15-5) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13),
libssl-dev,
zlib1g-dev,
d-shlibs
-Standards-Version: 4.6.0
+Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/libstatgen
Vcs-Git: https://salsa.debian.org/med-team/libstatgen.git
Homepage: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen
=====================================
debian/libstatgen1.symbols
=====================================
@@ -37,7 +37,6 @@ libStatGen.so.1 libstatgen1 #MINVER#
(c++)"Input(char const*, double&, double)@Base" 1.0.14
(c++)"Input(char const*, int&, int)@Base" 1.0.14
(c++)"error(char const*, ...)@Base" 1.0.14
- (c++)"ifclose(InputFile*&)@Base" 1.0.14
(c++)"warning(char const*, ...)@Base" 1.0.14
(c++)"ifprintf(InputFile*, char const*, ...)@Base" 1.0.14
(c++)"numerror(char const*, ...)@Base" 1.0.14
@@ -138,6 +137,7 @@ libStatGen.so.1 libstatgen1 #MINVER#
_ZN9FastQFile11interleavedEv at Base 1.0.15
_ZNK13VcfRecordInfo11getInfoPairB5cxx11Ei at Base 1.0.15
_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_ at Base 1.0.14
+ _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE4findERKS5_ at Base 1.0.15
_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE9_M_rehashEmRKm at Base 1.0.15
_ZNSt12_Destroy_auxILb0EE9__destroyIP6StringEEvT_S4_ at Base 1.0.14
_ZNSt12_Destroy_auxILb0EE9__destroyIPN9IndexBase9ReferenceEEEvT_S5_ at Base 1.0.14
@@ -151,7 +151,6 @@ libStatGen.so.1 libstatgen1 #MINVER#
_ZNSt12_Vector_baseIfSaIfEED2Ev at Base 1.0.14
_ZNSt12_Vector_baseIiSaIiEED1Ev at Base 1.0.14
_ZNSt12_Vector_baseIiSaIiEED2Ev at Base 1.0.14
- _ZNSt22__uninitialized_fill_nILb0EE15__uninit_fill_nIPSt6vectorIbSaIbEEmS4_EET_S6_T0_RKT1_ at Base 1.0.14
_ZNSt6vectorIP12SamHeaderTagSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.0.14
_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_ at Base 1.0.14
_ZNSt6vectorIfSaIfEE17_M_realloc_insertIJRKfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_ at Base 1.0.14
@@ -162,6 +161,12 @@ libStatGen.so.1 libstatgen1 #MINVER#
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 1.0.15
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 1.0.15
_ZNSt7__cxx119to_stringEx at Base 1.0.15
+ _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE22_M_emplace_hint_uniqueIJS0_ImS2_EEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_ at Base 1.0.15
+ _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE24_M_get_insert_unique_posERS1_ at Base 1.0.15
+ _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_ at Base 1.0.15
+ _ZSt16__do_uninit_copyIPK6StringPS0_ET0_T_S5_S4_ at Base 1.0.15
+ _ZSt18__do_uninit_fill_nIPSt6vectorIbSaIbEEmS2_ET_S4_T0_RKT1_ at Base 1.0.15
+ _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_ at Base 1.0.15
_ZZNSt8__detail18__to_chars_10_implIyEEvPcjT_E8__digits at Base 1.0.15
(c++)"VectorFunc::~VectorFunc()@Base" 1.0.14
(c++)"VectorFunc::~VectorFunc()@Base" 1.0.14
@@ -1999,7 +2004,6 @@ libStatGen.so.1 libstatgen1 #MINVER#
(c++)"VcfHeader::getNumSamples() const at Base" 1.0.14
(c++)"VcfHeader::getSampleName(unsigned int) const at Base" 1.0.14
(c++)"VcfHeader::getSampleIndex(char const*) const at Base" 1.0.14
- (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::_M_find_before_node(unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long) const at Base" 1.0.14
(c++)"std::ctype<char>::do_widen(char) const at Base" 1.0.14
(c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::clear()@Base" 1.0.14
(c++)"std::_Deque_base<SamRecord*, std::allocator<SamRecord*> >::_M_initialize_map(unsigned long)@Base" 1.0.14
@@ -2009,7 +2013,6 @@ libStatGen.so.1 libstatgen1 #MINVER#
(c++)"std::vector<String, std::allocator<String> >::_M_default_append(unsigned long)@Base" 1.0.14
(c++)"void std::vector<String, std::allocator<String> >::_M_realloc_insert<String const&>(__gnu_cxx::__normal_iterator<String*, std::vector<String, std::allocator<String> > >, String const&)@Base" 1.0.14
(c++)"void std::vector<String, std::allocator<String> >::_M_realloc_insert<String>(__gnu_cxx::__normal_iterator<String*, std::vector<String, std::allocator<String> > >, String&&)@Base" 1.0.14
- (c++)"std::vector<String, std::allocator<String> >::operator=(std::vector<String, std::allocator<String> > const&)@Base" 1.0.14
(c++)"void std::vector<BaseCount, std::allocator<BaseCount> >::_M_realloc_insert<BaseCount const&>(__gnu_cxx::__normal_iterator<BaseCount*, std::vector<BaseCount, std::allocator<BaseCount> > >, BaseCount const&)@Base" 1.0.14
(c++)"void std::vector<Cigar::CigarOperator, std::allocator<Cigar::CigarOperator> >::_M_realloc_insert<Cigar::CigarOperator const&>(__gnu_cxx::__normal_iterator<Cigar::CigarOperator*, std::vector<Cigar::CigarOperator, std::allocator<Cigar::CigarOperator> > >, Cigar::CigarOperator const&)@Base" 1.0.14
(c++)"std::vector<IndexBase::Bin, std::allocator<IndexBase::Bin> >::_M_default_append(unsigned long)@Base" 1.0.14
@@ -2043,8 +2046,6 @@ libStatGen.so.1 libstatgen1 #MINVER#
(c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_get_insert_unique_pos(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
(c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_get_insert_hint_unique_pos(std::_Rb_tree_const_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
(c++)"std::pair<std::_Rb_tree_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, bool> std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> > >::_M_emplace_unique<std::pair<char const*, unsigned int> >(std::pair<char const*, unsigned int>&&)@Base" 1.0.14
- (c++)"std::pair<std::_Rb_tree_iterator<std::pair<unsigned long const, Chunk> >, bool> std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_emplace_unique<std::pair<unsigned long, Chunk> >(std::pair<unsigned long, Chunk>&&)@Base" 1.0.14
- (c++)"std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > std::operator+<char, std::char_traits<char>, std::allocator<char> >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, char const*)@Base" 1.0.14
(c++)"typeinfo for BGZFReader at Base" 1.0.14
(c++)"typeinfo for FileReader at Base" 1.0.14
(c++)"typeinfo for StringHash at Base" 1.0.14
View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/6e4611fdaec70d269b25849f5d4a998a54fc2513...65d2398c46d97c8ed4f3f7ca430609c8564a8f86
--
View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/6e4611fdaec70d269b25849f5d4a998a54fc2513...65d2398c46d97c8ed4f3f7ca430609c8564a8f86
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