[med-svn] [Git][med-team/delly][master] 2 commits: Add patch to use shared htslib and fix reprotest

[Mohd Bilal (@rmb)]

Mohd  Bilal pushed to branch master at Debian Med / delly


Commits:
bbeb332f by Mohammed Bilal at 2022-08-11T10:13:01+00:00
Add patch to use shared htslib and fix reprotest

- - - - -
f092db53 by Mohammed Bilal at 2022-08-11T16:03:58+05:30
Update changelog

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/reproducible.patch
- + debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -6,8 +6,9 @@ delly (1.1.3-1) UNRELEASED; urgency=medium
   * Add autopkgtests
   * d/rules : remove src/dpe from build target
   * Fix blhc
+  * Add patch to use shared htslib and fix reprotest
 
- -- Mohammed Bilal <mdbilal at disroot.org>  Wed, 10 Aug 2022 15:01:37 +0000
+ -- Mohammed Bilal <mdbilal at disroot.org>  Thu, 11 Aug 2022 16:03:37 +0530
 
 delly (1.0.3-1) unstable; urgency=medium
 


=====================================
debian/patches/reproducible.patch
=====================================
@@ -0,0 +1,21 @@
+Description: Use libhts-dev from the archive
+ The upstream repo includes htslib as a submodule that gets
+ built with the delly code. This patch changes this to use
+ Debian's shared libhts from the archive.
+ This was done inorder to make the builds reproducible
+Author: Mohammed Bilal <mdbilal at disroot.org>>
+Forwarded: not-needed
+Last-Update: 2022-08-11
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- a/Makefile
++++ b/Makefile
+@@ -4,7 +4,7 @@
+ 
+ # Submodules
+ PWD = $(shell pwd)
+-EBROOTHTSLIB ?= ${PWD}/src/htslib/
++EBROOTHTSLIB ?= /usr/include/htslib/
+ 
+ # Install dir
+ prefix = ${PWD}


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+reproducible.patch



View it on GitLab: https://salsa.debian.org/med-team/delly/-/compare/bdd387c08ab0ee91dca5c3982e6b5a0ba87e63b3...f092db53d12dfeaa456df5d7f57c1dcf3d38153b

-- 
View it on GitLab: https://salsa.debian.org/med-team/delly/-/compare/bdd387c08ab0ee91dca5c3982e6b5a0ba87e63b3...f092db53d12dfeaa456df5d7f57c1dcf3d38153b
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