[med-svn] [Git][med-team/biomaj3-process][master] 2 commits: New upstream version 3.0.19
Olivier Sallou (@osallou)
gitlab at salsa.debian.org
Mon Aug 29 13:47:28 BST 2022
Olivier Sallou pushed to branch master at Debian Med / biomaj3-process
Commits:
97623639 by Olivier Sallou at 2022-08-29T12:46:59+00:00
New upstream version 3.0.19
- - - - -
c62f1d62 by Olivier Sallou at 2022-08-29T12:47:00+00:00
Update upstream source from tag 'upstream/3.0.19'
Update to upstream version '3.0.19'
with Debian dir 5f3c38804d71ba67b78ee6a88d1089803de3a0ef
- - - - -
9 changed files:
- CHANGES.txt
- README.md
- biomaj_process/message/procmessage.proto
- biomaj_process/message/procmessage_pb2.py
- biomaj_process/process_service.py
- requirements.txt
- setup.py
- tests/biomaj_tests.py
- tests/config.yml
Changes:
=====================================
CHANGES.txt
=====================================
@@ -1,3 +1,5 @@
+3.0.19
+ Replace nose by pytest
3.0.18:
Normalize yaml setup with other biomaj components
3.0.17:
=====================================
README.md
=====================================
@@ -17,9 +17,12 @@ To compile protobuf, in biomaj_process/message:
flake8 biomaj_process
+ CONFIG=tests/config.yml python -m pytest -v tests/biomaj_tests.py
+
# Run
## Message consumer:
+
export BIOMAJ_CONFIG=path_to_config.yml
python bin/biomaj_process_consumer.py
=====================================
biomaj_process/message/procmessage.proto
=====================================
@@ -1,3 +1,5 @@
+syntax = "proto2";
+
package biomaj.process;
message Process {
=====================================
biomaj_process/message/procmessage_pb2.py
=====================================
@@ -1,13 +1,12 @@
+# -*- coding: utf-8 -*-
# Generated by the protocol buffer compiler. DO NOT EDIT!
# source: procmessage.proto
-
-import sys
-_b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1'))
+"""Generated protocol buffer code."""
from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
from google.protobuf import message as _message
from google.protobuf import reflection as _reflection
from google.protobuf import symbol_database as _symbol_database
-from google.protobuf import descriptor_pb2
# @@protoc_insertion_point(imports)
_sym_db = _symbol_database.Default()
@@ -15,342 +14,67 @@ _sym_db = _symbol_database.Default()
-DESCRIPTOR = _descriptor.FileDescriptor(
- name='procmessage.proto',
- package='biomaj.process',
- serialized_pb=_b('\n\x11procmessage.proto\x12\x0e\x62iomaj.process\"\xfc\x02\n\x07Process\x12\x0c\n\x04\x62\x61nk\x18\x01 \x02(\t\x12\x0f\n\x07session\x18\x02 \x02(\t\x12\x0f\n\x07log_dir\x18\x03 \x02(\t\x12\x0b\n\x03\x65xe\x18\x04 \x02(\t\x12\x0c\n\x04\x61rgs\x18\x05 \x03(\t\x12\x30\n\x08\x65nv_vars\x18\x06 \x03(\x0b\x32\x1e.biomaj.process.Process.EnvVar\x12\x1b\n\x0cshell_expand\x18\x07 \x01(\x08:\x05\x66\x61lse\x12\x0c\n\x04name\x18\x08 \x01(\t\x12\x13\n\x0b\x64\x65scription\x18\t \x01(\t\x12\x11\n\tproc_type\x18\n \x01(\t\x12\x18\n\tis_docker\x18\x0b \x01(\x08:\x05\x66\x61lse\x12.\n\x06\x64ocker\x18\x0c \x01(\x0b\x32\x1e.biomaj.process.Process.Docker\x1a%\n\x06\x45nvVar\x12\x0c\n\x04name\x18\x01 \x02(\t\x12\r\n\x05value\x18\x02 \x02(\t\x1a\x30\n\x06\x44ocker\x12\r\n\x05image\x18\x01 \x02(\t\x12\x17\n\x08use_sudo\x18\x02 \x01(\x08:\x05\x66\x61lse\"\xe7\x01\n\tOperation\x12(\n\x07process\x18\x01 \x01(\x0b\x32\x17.biomaj.process.Process\x12:\n\x04type\x18\x02 \x02(\x0e\x32#.biomaj.process.Operation.OPERATION:\x07\x45XECUTE\x12.\n\x05trace\x18\x03 \x01(\x0b\x32\x1f.biomaj.process.Operation.Trace\x1a*\n\x05Trace\x12\x10\n\x08trace_id\x18\x01 \x02(\t\x12\x0f\n\x07span_id\x18\x02 \x02(\t\"\x18\n\tOPERATION\x12\x0b\n\x07\x45XECUTE\x10\x01')
-)
-_sym_db.RegisterFileDescriptor(DESCRIPTOR)
-
-
-
-_OPERATION_OPERATION = _descriptor.EnumDescriptor(
- name='OPERATION',
- full_name='biomaj.process.Operation.OPERATION',
- filename=None,
- file=DESCRIPTOR,
- values=[
- _descriptor.EnumValueDescriptor(
- name='EXECUTE', index=0, number=1,
- options=None,
- type=None),
- ],
- containing_type=None,
- options=None,
- serialized_start=628,
- serialized_end=652,
-)
-_sym_db.RegisterEnumDescriptor(_OPERATION_OPERATION)
-
-
-_PROCESS_ENVVAR = _descriptor.Descriptor(
- name='EnvVar',
- full_name='biomaj.process.Process.EnvVar',
- filename=None,
- file=DESCRIPTOR,
- containing_type=None,
- fields=[
- _descriptor.FieldDescriptor(
- name='name', full_name='biomaj.process.Process.EnvVar.name', index=0,
- number=1, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='value', full_name='biomaj.process.Process.EnvVar.value', index=1,
- number=2, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- ],
- extensions=[
- ],
- nested_types=[],
- enum_types=[
- ],
- options=None,
- is_extendable=False,
- extension_ranges=[],
- oneofs=[
- ],
- serialized_start=331,
- serialized_end=368,
-)
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x11procmessage.proto\x12\x0e\x62iomaj.process\"\xfc\x02\n\x07Process\x12\x0c\n\x04\x62\x61nk\x18\x01 \x02(\t\x12\x0f\n\x07session\x18\x02 \x02(\t\x12\x0f\n\x07log_dir\x18\x03 \x02(\t\x12\x0b\n\x03\x65xe\x18\x04 \x02(\t\x12\x0c\n\x04\x61rgs\x18\x05 \x03(\t\x12\x30\n\x08\x65nv_vars\x18\x06 \x03(\x0b\x32\x1e.biomaj.process.Process.EnvVar\x12\x1b\n\x0cshell_expand\x18\x07 \x01(\x08:\x05\x66\x61lse\x12\x0c\n\x04name\x18\x08 \x01(\t\x12\x13\n\x0b\x64\x65scription\x18\t \x01(\t\x12\x11\n\tproc_type\x18\n \x01(\t\x12\x18\n\tis_docker\x18\x0b \x01(\x08:\x05\x66\x61lse\x12.\n\x06\x64ocker\x18\x0c \x01(\x0b\x32\x1e.biomaj.process.Process.Docker\x1a%\n\x06\x45nvVar\x12\x0c\n\x04name\x18\x01 \x02(\t\x12\r\n\x05value\x18\x02 \x02(\t\x1a\x30\n\x06\x44ocker\x12\r\n\x05image\x18\x01 \x02(\t\x12\x17\n\x08use_sudo\x18\x02 \x01(\x08:\x05\x66\x61lse\"\xe7\x01\n\tOperation\x12(\n\x07process\x18\x01 \x01(\x0b\x32\x17.biomaj.process.Process\x12:\n\x04type\x18\x02 \x02(\x0e\x32#.biomaj.process.Operation.OPERATION:\x07\x45XECUTE\x12.\n\x05trace\x18\x03 \x01(\x0b\x32\x1f.biomaj.process.Operation.Trace\x1a*\n\x05Trace\x12\x10\n\x08trace_id\x18\x01 \x02(\t\x12\x0f\n\x07span_id\x18\x02 \x02(\t\"\x18\n\tOPERATION\x12\x0b\n\x07\x45XECUTE\x10\x01')
-_PROCESS_DOCKER = _descriptor.Descriptor(
- name='Docker',
- full_name='biomaj.process.Process.Docker',
- filename=None,
- file=DESCRIPTOR,
- containing_type=None,
- fields=[
- _descriptor.FieldDescriptor(
- name='image', full_name='biomaj.process.Process.Docker.image', index=0,
- number=1, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='use_sudo', full_name='biomaj.process.Process.Docker.use_sudo', index=1,
- number=2, type=8, cpp_type=7, label=1,
- has_default_value=True, default_value=False,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- ],
- extensions=[
- ],
- nested_types=[],
- enum_types=[
- ],
- options=None,
- is_extendable=False,
- extension_ranges=[],
- oneofs=[
- ],
- serialized_start=370,
- serialized_end=418,
-)
-_PROCESS = _descriptor.Descriptor(
- name='Process',
- full_name='biomaj.process.Process',
- filename=None,
- file=DESCRIPTOR,
- containing_type=None,
- fields=[
- _descriptor.FieldDescriptor(
- name='bank', full_name='biomaj.process.Process.bank', index=0,
- number=1, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='session', full_name='biomaj.process.Process.session', index=1,
- number=2, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='log_dir', full_name='biomaj.process.Process.log_dir', index=2,
- number=3, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='exe', full_name='biomaj.process.Process.exe', index=3,
- number=4, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='args', full_name='biomaj.process.Process.args', index=4,
- number=5, type=9, cpp_type=9, label=3,
- has_default_value=False, default_value=[],
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='env_vars', full_name='biomaj.process.Process.env_vars', index=5,
- number=6, type=11, cpp_type=10, label=3,
- has_default_value=False, default_value=[],
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='shell_expand', full_name='biomaj.process.Process.shell_expand', index=6,
- number=7, type=8, cpp_type=7, label=1,
- has_default_value=True, default_value=False,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='name', full_name='biomaj.process.Process.name', index=7,
- number=8, type=9, cpp_type=9, label=1,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='description', full_name='biomaj.process.Process.description', index=8,
- number=9, type=9, cpp_type=9, label=1,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='proc_type', full_name='biomaj.process.Process.proc_type', index=9,
- number=10, type=9, cpp_type=9, label=1,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='is_docker', full_name='biomaj.process.Process.is_docker', index=10,
- number=11, type=8, cpp_type=7, label=1,
- has_default_value=True, default_value=False,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='docker', full_name='biomaj.process.Process.docker', index=11,
- number=12, type=11, cpp_type=10, label=1,
- has_default_value=False, default_value=None,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- ],
- extensions=[
- ],
- nested_types=[_PROCESS_ENVVAR, _PROCESS_DOCKER, ],
- enum_types=[
- ],
- options=None,
- is_extendable=False,
- extension_ranges=[],
- oneofs=[
- ],
- serialized_start=38,
- serialized_end=418,
-)
+_PROCESS = DESCRIPTOR.message_types_by_name['Process']
+_PROCESS_ENVVAR = _PROCESS.nested_types_by_name['EnvVar']
+_PROCESS_DOCKER = _PROCESS.nested_types_by_name['Docker']
+_OPERATION = DESCRIPTOR.message_types_by_name['Operation']
+_OPERATION_TRACE = _OPERATION.nested_types_by_name['Trace']
+_OPERATION_OPERATION = _OPERATION.enum_types_by_name['OPERATION']
+Process = _reflection.GeneratedProtocolMessageType('Process', (_message.Message,), {
-_OPERATION_TRACE = _descriptor.Descriptor(
- name='Trace',
- full_name='biomaj.process.Operation.Trace',
- filename=None,
- file=DESCRIPTOR,
- containing_type=None,
- fields=[
- _descriptor.FieldDescriptor(
- name='trace_id', full_name='biomaj.process.Operation.Trace.trace_id', index=0,
- number=1, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='span_id', full_name='biomaj.process.Operation.Trace.span_id', index=1,
- number=2, type=9, cpp_type=9, label=2,
- has_default_value=False, default_value=_b("").decode('utf-8'),
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- ],
- extensions=[
- ],
- nested_types=[],
- enum_types=[
- ],
- options=None,
- is_extendable=False,
- extension_ranges=[],
- oneofs=[
- ],
- serialized_start=584,
- serialized_end=626,
-)
-
-_OPERATION = _descriptor.Descriptor(
- name='Operation',
- full_name='biomaj.process.Operation',
- filename=None,
- file=DESCRIPTOR,
- containing_type=None,
- fields=[
- _descriptor.FieldDescriptor(
- name='process', full_name='biomaj.process.Operation.process', index=0,
- number=1, type=11, cpp_type=10, label=1,
- has_default_value=False, default_value=None,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='type', full_name='biomaj.process.Operation.type', index=1,
- number=2, type=14, cpp_type=8, label=2,
- has_default_value=True, default_value=1,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- _descriptor.FieldDescriptor(
- name='trace', full_name='biomaj.process.Operation.trace', index=2,
- number=3, type=11, cpp_type=10, label=1,
- has_default_value=False, default_value=None,
- message_type=None, enum_type=None, containing_type=None,
- is_extension=False, extension_scope=None,
- options=None),
- ],
- extensions=[
- ],
- nested_types=[_OPERATION_TRACE, ],
- enum_types=[
- _OPERATION_OPERATION,
- ],
- options=None,
- is_extendable=False,
- extension_ranges=[],
- oneofs=[
- ],
- serialized_start=421,
- serialized_end=652,
-)
-
-_PROCESS_ENVVAR.containing_type = _PROCESS
-_PROCESS_DOCKER.containing_type = _PROCESS
-_PROCESS.fields_by_name['env_vars'].message_type = _PROCESS_ENVVAR
-_PROCESS.fields_by_name['docker'].message_type = _PROCESS_DOCKER
-_OPERATION_TRACE.containing_type = _OPERATION
-_OPERATION.fields_by_name['process'].message_type = _PROCESS
-_OPERATION.fields_by_name['type'].enum_type = _OPERATION_OPERATION
-_OPERATION.fields_by_name['trace'].message_type = _OPERATION_TRACE
-_OPERATION_OPERATION.containing_type = _OPERATION
-DESCRIPTOR.message_types_by_name['Process'] = _PROCESS
-DESCRIPTOR.message_types_by_name['Operation'] = _OPERATION
-
-Process = _reflection.GeneratedProtocolMessageType('Process', (_message.Message,), dict(
-
- EnvVar = _reflection.GeneratedProtocolMessageType('EnvVar', (_message.Message,), dict(
- DESCRIPTOR = _PROCESS_ENVVAR,
- __module__ = 'procmessage_pb2'
+ 'EnvVar' : _reflection.GeneratedProtocolMessageType('EnvVar', (_message.Message,), {
+ 'DESCRIPTOR' : _PROCESS_ENVVAR,
+ '__module__' : 'procmessage_pb2'
# @@protoc_insertion_point(class_scope:biomaj.process.Process.EnvVar)
- ))
+ })
,
- Docker = _reflection.GeneratedProtocolMessageType('Docker', (_message.Message,), dict(
- DESCRIPTOR = _PROCESS_DOCKER,
- __module__ = 'procmessage_pb2'
+ 'Docker' : _reflection.GeneratedProtocolMessageType('Docker', (_message.Message,), {
+ 'DESCRIPTOR' : _PROCESS_DOCKER,
+ '__module__' : 'procmessage_pb2'
# @@protoc_insertion_point(class_scope:biomaj.process.Process.Docker)
- ))
+ })
,
- DESCRIPTOR = _PROCESS,
- __module__ = 'procmessage_pb2'
+ 'DESCRIPTOR' : _PROCESS,
+ '__module__' : 'procmessage_pb2'
# @@protoc_insertion_point(class_scope:biomaj.process.Process)
- ))
+ })
_sym_db.RegisterMessage(Process)
_sym_db.RegisterMessage(Process.EnvVar)
_sym_db.RegisterMessage(Process.Docker)
-Operation = _reflection.GeneratedProtocolMessageType('Operation', (_message.Message,), dict(
+Operation = _reflection.GeneratedProtocolMessageType('Operation', (_message.Message,), {
- Trace = _reflection.GeneratedProtocolMessageType('Trace', (_message.Message,), dict(
- DESCRIPTOR = _OPERATION_TRACE,
- __module__ = 'procmessage_pb2'
+ 'Trace' : _reflection.GeneratedProtocolMessageType('Trace', (_message.Message,), {
+ 'DESCRIPTOR' : _OPERATION_TRACE,
+ '__module__' : 'procmessage_pb2'
# @@protoc_insertion_point(class_scope:biomaj.process.Operation.Trace)
- ))
+ })
,
- DESCRIPTOR = _OPERATION,
- __module__ = 'procmessage_pb2'
+ 'DESCRIPTOR' : _OPERATION,
+ '__module__' : 'procmessage_pb2'
# @@protoc_insertion_point(class_scope:biomaj.process.Operation)
- ))
+ })
_sym_db.RegisterMessage(Operation)
_sym_db.RegisterMessage(Operation.Trace)
-
+if _descriptor._USE_C_DESCRIPTORS == False:
+
+ DESCRIPTOR._options = None
+ _PROCESS._serialized_start=38
+ _PROCESS._serialized_end=418
+ _PROCESS_ENVVAR._serialized_start=331
+ _PROCESS_ENVVAR._serialized_end=368
+ _PROCESS_DOCKER._serialized_start=370
+ _PROCESS_DOCKER._serialized_end=418
+ _OPERATION._serialized_start=421
+ _OPERATION._serialized_end=652
+ _OPERATION_TRACE._serialized_start=584
+ _OPERATION_TRACE._serialized_end=626
+ _OPERATION_OPERATION._serialized_start=628
+ _OPERATION_OPERATION._serialized_end=652
# @@protoc_insertion_point(module_scope)
=====================================
biomaj_process/process_service.py
=====================================
@@ -61,6 +61,23 @@ def consul_declare(config):
return False
+class MemoryStore(object):
+
+ def __init__(self) -> None:
+ self.data = {}
+
+ def delete(self, key):
+ if key in self.data:
+ del self.data[key]
+
+ def set(self, key, value):
+ self.data[key] = value
+
+ def get(self, key):
+ if key not in self.data:
+ return None
+ return self.data[key]
+
class ProcessService(object):
channel = None
@@ -90,11 +107,13 @@ class ProcessService(object):
if not self.redis_client:
self.logger.debug('Init redis connection')
- self.redis_client = redis.StrictRedis(host=self.config['redis']['host'],
+ if self.config['redis']['host']:
+ self.redis_client = redis.StrictRedis(host=self.config['redis']['host'],
port=self.config['redis']['port'],
db=self.config['redis']['db'],
decode_responses=True)
-
+ else:
+ self.redis_client = MemoryStore()
if rabbitmq and not self.channel:
connection = None
rabbitmq_port = self.config['rabbitmq']['port']
=====================================
requirements.txt
=====================================
@@ -1,5 +1,5 @@
mock
-nose
+pytest
pika==0.13.0
redis
PyYAML
=====================================
setup.py
=====================================
@@ -21,7 +21,7 @@ config = {
'url': 'http://biomaj.genouest.org',
'download_url': 'http://biomaj.genouest.org',
'author_email': 'olivier.sallou at irisa.fr',
- 'version': '3.0.18',
+ 'version': '3.0.19',
'classifiers': [
# How mature is this project? Common values are
# 3 - Alpha
@@ -53,8 +53,7 @@ config = {
'protobuf',
'requests'
],
- 'tests_require': ['nose', 'mock'],
- 'test_suite': 'nose.collector',
+ 'tests_require': ['pytest', 'mock'],
'packages': find_packages(),
'include_package_data': True,
'scripts': ['bin/biomaj_process_consumer.py'],
=====================================
tests/biomaj_tests.py
=====================================
@@ -1,6 +1,3 @@
-from nose.tools import *
-from nose.plugins.attrib import attr
-
import json
import shutil
import os
@@ -15,18 +12,18 @@ from mock import patch
from biomaj_process.message import procmessage_pb2
from biomaj_process.process_service import ProcessService
-import unittest
+import pytest
-class TestBiomajProcess(unittest.TestCase):
+class TestBiomajProcess():
- def setUp(self):
+ def setup_method(self, m):
self.curdir = os.path.dirname(os.path.realpath(__file__))
self.pserv = ProcessService(os.path.join(self.curdir, 'config.yml'),rabbitmq=False)
self.session = self.pserv._create_session('test')
self.test_dir = tempfile.mkdtemp('biomaj')
- def tearDown(self):
+ def teardown_method(self, m):
self.pserv.clean()
shutil.rmtree(self.test_dir)
@@ -47,4 +44,4 @@ class TestBiomajProcess(unittest.TestCase):
msg.shell_expand = False
print(msg)
proc = self.pserv.execute(msg)
- self.assertTrue(proc['exitcode'] == 0)
+ assert (proc['exitcode'] == 0)
=====================================
tests/config.yml
=====================================
@@ -1,7 +1,7 @@
redis:
- host: '127.0.0.1'
+ host: ''
#host: '131.254.17.40'
port: 6379
db: 0
View it on GitLab: https://salsa.debian.org/med-team/biomaj3-process/-/compare/e6af82e771ed7a0bf44d2b3df0abe9300f11db0e...c62f1d6241a4c2eaa6abc8a7823035595c262a17
--
View it on GitLab: https://salsa.debian.org/med-team/biomaj3-process/-/compare/e6af82e771ed7a0bf44d2b3df0abe9300f11db0e...c62f1d6241a4c2eaa6abc8a7823035595c262a17
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