[med-svn] [Git][med-team/plink2][upstream] New upstream version 2.00~a3.5-220809+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / plink2


Commits:
358a17ba by Andreas Tille at 2022-12-12T09:33:29+01:00
New upstream version 2.00~a3.5-220809+dfsg
- - - - -


3 changed files:

- include/plink2_base.h
- plink2.cc
- plink2_merge.cc


Changes:

=====================================
include/plink2_base.h
=====================================
@@ -713,7 +713,7 @@ CONSTI32(kBytesPerVec, 32);
 // However, processor power management, numeric libraries, and my AVX2 code
 // should improve over time.  There will probably come a time where switching
 // to 32-byte fp is worthwhile.
-#define FVEC_32
+// #define FVEC_32
 
 // bleah, have to define these here, vector_size doesn't see enum values
 typedef uintptr_t VecW __attribute__ ((vector_size (32)));


=====================================
plink2.cc
=====================================
@@ -44,7 +44,7 @@
 namespace plink2 {
 #endif
 
-static const char ver_str[] = "PLINK v2.00a3.4"
+static const char ver_str[] = "PLINK v2.00a3.5"
 #ifdef NOLAPACK
   "NL"
 #endif
@@ -72,7 +72,7 @@ static const char ver_str[] = "PLINK v2.00a3.4"
 #ifdef USE_MKL
   " Intel"
 #endif
-  " (1 Aug 2022)";
+  " (9 Aug 2022)";
 static const char ver_str2[] =
   // include leading space if day < 10, so character length stays the same
   " "


=====================================
plink2_merge.cc
=====================================
@@ -5539,6 +5539,8 @@ PglErr MergePgenVariantNoTmpLocked(SamePosPvarRecord** same_id_records, const Al
       } else {
         reterr = PgrGetMDp(sample_include, cur_mrp->pssi, read_sample_ct, read_variant_uidx, pgrp, pgvp);
       }
+      // bugfix (9 Aug 2022)
+      ZeroTrailingNyps(read_sample_ct, pgvp->genovec);
       if (unlikely(reterr)) {
         PgenErrPrintNV(reterr, read_variant_uidx);
         goto MergePgenVariantNoTmpLocked_ret_1;



View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/358a17bac1d71f976b4a57f9b37fe1070868d921

-- 
View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/358a17bac1d71f976b4a57f9b37fe1070868d921
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