Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cf8f016e by Andreas Tille at 2022-02-15T13:42:49+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,148 +1,142 @@
-Last-Update: Tue, 15 Feb 2022 01:42:03 +0000
+Last-Update: Tue, 15 Feb 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 191 | {covid-19,imaging} |
- orthanc | 102 | {imaging,covid-19,practice} |
- orthanc-wsi | 53 | {practice,laboratory,covid-19,imaging,his,oncology} |
- htsjdk | 30 | {bio-dev} |
- amide | 28 | {imaging} |
- dicomscope | 27 | {imaging} |
+ dcmtk | 186 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
+ orthanc-wsi | 51 | {practice,laboratory,covid-19,imaging,his,oncology} |
+ amide | 27 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
+ dicomscope | 25 | {imaging} |
dcm2niix | 23 | {imaging} |
dicom3tools | 23 | {imaging} |
- orthanc-webviewer | 18 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
- gdcm | 14 | {covid-19,imaging} |
+ orthanc-webviewer | 17 | {imaging} |
+ ngs-sdk | 15 | {bio-dev} |
gnumed-server | 14 | {practice,covid-19} |
- invesalius | 12 | {imaging} |
- mrtrix3 | 12 | {imaging} |
- nifticlib | 12 | {imaging} |
- adun.app | 11 | {bio} |
- gdcm | 11 | {imaging-dev} |
- lagan | 11 | {bio} |
- minc-tools | 11 | {imaging} |
- dicomnifti | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
+ gdcm | 12 | {covid-19,imaging} |
+ gdcm | 12 | {imaging-dev} |
+ invesalius | 11 | {imaging} |
+ mrtrix3 | 11 | {imaging} |
+ nifticlib | 11 | {imaging} |
+ adun.app | 10 | {bio} |
+ lagan | 10 | {bio} |
+ minc-tools | 10 | {imaging} |
+ dicomnifti | 9 | {imaging} |
nifticlib | 9 | {imaging-dev} |
- orthanc-postgresql | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
libminc | 8 | {imaging-dev} |
- librg-utils-perl | 8 | {bio} |
+ ngs-sdk | 8 | {bio-dev} |
orthanc-dicomweb | 8 | {imaging,covid-19} |
- mia | 7 | {imaging} |
- ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
+ orthanc-postgresql | 8 | {imaging} |
+ librg-utils-perl | 7 | {bio} |
openslide | 7 | {imaging} |
- orthanc-mysql | 7 | {imaging} |
- plastimatch | 7 | {imaging} |
- treeview | 7 | {bio-phylogeny,bio} |
- biojava-live | 6 | {bio-dev} |
- jebl2 | 6 | {bio-dev} |
+ mia | 6 | {imaging} |
+ ngs-sdk | 6 | {bio-dev} |
+ nifti2dicom | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
- bio-tradis | 5 | {bio,bio-dev} |
- getdata | 5 | {bio} |
- ghmm | 5 | {bio} |
- king | 5 | {typesetting,imaging} |
- nifti2dicom | 5 | {imaging} |
+ orthanc-mysql | 6 | {imaging} |
+ plastimatch | 6 | {imaging} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ biojava-live | 5 | {bio-dev} |
+ jebl2 | 5 | {bio-dev} |
nipype | 5 | {imaging-dev,imaging} |
- obitools | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
- canu | 4 | {bio} |
- dicompyler | 4 | {oncology} |
- jellyfish1 | 4 | {bio} |
- lamarc | 4 | {bio} |
- melting | 4 | {bio,cloud} |
- mhap | 4 | {bio-ngs,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ getdata | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ king | 4 | {typesetting,imaging} |
+ libsbml | 4 | {bio-dev} |
+ nifti2dicom | 4 | {imaging} |
+ obitools | 4 | {bio} |
orthanc-gdcm | 4 | {imaging} |
orthanc-python | 4 | {covid-19} |
oscar | 4 | {data,tools,practice} |
- phyutility | 4 | {bio,cloud} |
- piler | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biomaj3-cli | 3 | {cloud} |
- bitseq | 3 | {bio} |
- blimps | 3 | {bio} |
- brig | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
+ salmon | 4 | {bio,covid-19} |
+ canu | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {bio,cloud} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
- gatb-core | 3 | {bio} |
- hinge | 3 | {bio} |
- ipig | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- placnet | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- proalign | 3 | {bio,bio-phylogeny} |
+ melting | 3 | {bio,cloud} |
+ mhap | 3 | {bio-ngs,bio} |
+ phyutility | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
pymia | 3 | {imaging-dev} |
- rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- sibsim4 | 3 | {cloud,bio} |
- sift | 3 | {bio} |
- spread-phy | 3 | {bio-phylogeny,bio} |
- stacks | 3 | {bio} |
- tracetuner | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {bio,cloud} |
- assemblytics | 2 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
bart-view | 2 | {imaging} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ biomaj3-cli | 2 | {cloud} |
+ bitseq | 2 | {bio} |
+ blimps | 2 | {bio} |
+ brig | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- cmtk | 2 | {imaging} |
+ clonalframeml | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
+ delly | 2 | {covid-19,bio} |
dextractor | 2 | {bio,covid-19} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
- libbio-mage-utils-perl | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
- microbegps | 2 | {bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ embassy-domalign | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
+ fastml | 2 | {bio} |
+ gatb-core | 2 | {bio} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
+ libncl | 2 | {bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ placnet | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
pplacer | 2 | {bio,bio-phylogeny,covid-19} |
- pscan-chip | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
python-wdlparse | 2 | {bio-dev} |
- qcumber | 2 | {bio} |
- sga | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
- staden | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ rambo-k | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ sibsim4 | 2 | {cloud,bio} |
+ sift | 2 | {bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
+ stacks | 2 | {bio} |
+ tracetuner | 2 | {bio} |
+ anfo | 1 | {cloud,bio} |
+ arden | 1 | {bio,cloud} |
+ assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
- cufflinks | 1 | {bio,cloud} |
+ cmtk | 1 | {imaging} |
+ cutesv | 1 | {bio} |
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
- libchado-perl | 1 | {bio-dev} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
+ libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mssstest | 1 | {tools} |
- opencfu | 1 | {laboratory} |
+ microbegps | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
- seq-gen | 1 | {bio} |
+ pscan-chip | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ sga | 1 | {bio} |
skesa | 1 | {bio} |
- srf | 1 | {bio-dev} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ sprai | 1 | {bio} |
+ staden | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {bio,covid-19} |
- varscan | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
+ tvc | 1 | {bio} |
+ zalign | 1 | {cloud,bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -150,7 +144,7 @@ Last-Update: Tue, 15 Feb 2022 01:42:03 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cutesv | 0 | {bio} |
+ cufflinks | 0 | {bio,cloud} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emperor | 0 | {bio} |
@@ -166,6 +160,7 @@ Last-Update: Tue, 15 Feb 2022 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
@@ -188,22 +183,27 @@ Last-Update: Tue, 15 Feb 2022 01:42:03 +0000
milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
+ srf | 0 | {bio-dev} |
tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
+ mssstest | -1 | {tools} |
(233 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf8f016e2f147fcebd4fa704b7d9547b32afe4db
--
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