Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e1c12a28 by Andreas Tille at 2022-01-06T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,56 +1,62 @@
-Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
+Last-Update: Thu, 06 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {imaging,covid-19} |
- orthanc | 108 | {covid-19,imaging,practice} |
- orthanc-wsi | 54 | {oncology,laboratory,practice,his,covid-19,imaging} |
- htsjdk | 30 | {bio-dev} |
- dicom3tools | 27 | {imaging} |
- amide | 24 | {imaging} |
- dicomscope | 24 | {imaging} |
- dcm2niix | 22 | {imaging} |
- orthanc-webviewer | 17 | {imaging} |
+ dcmtk | 178 | {imaging,covid-19} |
+ orthanc | 104 | {covid-19,imaging,practice} |
+ orthanc-wsi | 51 | {oncology,laboratory,practice,his,covid-19,imaging} |
+ htsjdk | 31 | {bio-dev} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 26 | {imaging} |
+ amide | 23 | {imaging} |
+ dcm2niix | 23 | {imaging} |
gdcm | 16 | {covid-19,imaging} |
+ orthanc-webviewer | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- minc-tools | 14 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ invesalius | 14 | {imaging} |
+ openslide | 14 | {imaging} |
adun.app | 13 | {bio} |
ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
+ dicomnifti | 12 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
insighttoolkit4 | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
pixelmed | 12 | {imaging} |
- dicomnifti | 11 | {imaging} |
- gdcm | 11 | {imaging-dev} |
libminc | 9 | {imaging-dev} |
+ mia | 9 | {imaging} |
nifticlib | 9 | {imaging} |
- jebl2 | 8 | {bio-dev} |
- mia | 8 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ biojava-live | 8 | {bio-dev} |
+ mrtrix3 | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
nifticlib | 8 | {imaging-dev} |
- plastimatch | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
+ jebl2 | 7 | {bio-dev} |
king | 7 | {typesetting,imaging} |
- mrtrix3 | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
+ openslide | 7 | {imaging-dev} |
lagan | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
nipype | 6 | {imaging,imaging-dev} |
- openslide | 6 | {imaging-dev} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
salmon | 6 | {covid-19,bio} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
- librg-utils-perl | 5 | {bio} |
- nifti2dicom | 5 | {imaging} |
obitools | 5 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
bio-tradis | 4 | {bio-dev,bio} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
+ dicompyler | 4 | {oncology} |
+ elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {cloud,bio} |
+ melting | 4 | {bio,cloud} |
oscar | 4 | {data,tools,practice} |
+ pymia | 4 | {imaging-dev} |
tracetuner | 4 | {bio} |
+ treeview | 4 | {bio,bio-phylogeny} |
anfo | 3 | {bio,cloud} |
arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
@@ -58,42 +64,42 @@ Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
canu | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
- dicompyler | 3 | {oncology} |
- elastix | 3 | {imaging} |
embassy-domsearch | 3 | {bio,cloud} |
fastml | 3 | {bio} |
gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
- melting | 3 | {bio,cloud} |
mhap | 3 | {bio,bio-ngs} |
orthanc-python | 3 | {covid-19} |
pigx-rnaseq | 3 | {bio,covid-19} |
piler | 3 | {bio} |
pscan-chip | 3 | {bio} |
- pymia | 3 | {imaging-dev} |
rdp-classifier | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
spread-phy | 3 | {bio,bio-phylogeny} |
stacks | 3 | {bio} |
staden | 3 | {bio} |
- treeview | 3 | {bio,bio-phylogeny} |
tvc | 3 | {bio} |
zalign | 3 | {bio,cloud} |
atropos | 2 | {bio} |
biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
clonalframeml | 2 | {covid-19,bio} |
+ cmtk | 2 | {imaging} |
delly | 2 | {bio,covid-19} |
dextractor | 2 | {covid-19,bio} |
emmax | 2 | {bio} |
- ghmm | 2 | {bio} |
+ getdata | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
kmerresistance | 2 | {bio} |
- lamarc | 2 | {bio} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
@@ -109,8 +115,6 @@ Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
rambo-k | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
skesa | 2 | {bio} |
@@ -124,12 +128,9 @@ Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
varna | 2 | {bio} |
- cmtk | 1 | {imaging} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
- getdata | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -191,8 +192,8 @@ Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -205,5 +206,5 @@ Last-Update: Thu, 06 Jan 2022 01:42:03 +0000
xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
tipp | -1 | {bio,covid-19} |
-(233 rows)
+(234 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1c12a28aa7cc201caf4bd1dca5fd994609f9942
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1c12a28aa7cc201caf4bd1dca5fd994609f9942
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