Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
380c9d69 by Andreas Tille at 2022-01-31T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,78 +1,99 @@
-Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
+Last-Update: Mon, 31 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 185 | {covid-19,imaging} |
orthanc | 101 | {imaging,covid-19,practice} |
orthanc-wsi | 55 | {practice,laboratory,covid-19,imaging,his,oncology} |
- htsjdk | 35 | {bio-dev} |
- dicom3tools | 26 | {imaging} |
+ htsjdk | 36 | {bio-dev} |
+ dicom3tools | 27 | {imaging} |
+ amide | 26 | {imaging} |
+ dcm2niix | 26 | {imaging} |
dicomscope | 26 | {imaging} |
- amide | 24 | {imaging} |
- dcm2niix | 24 | {imaging} |
orthanc-webviewer | 19 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
+ ngs-sdk | 17 | {bio-dev} |
gnumed-server | 15 | {practice,covid-19} |
- gdcm | 13 | {covid-19,imaging} |
- invesalius | 11 | {imaging} |
- adun.app | 10 | {bio} |
- minc-tools | 10 | {imaging} |
- gdcm | 9 | {imaging-dev} |
- lagan | 9 | {bio} |
- mrtrix3 | 9 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
+ invesalius | 12 | {imaging} |
+ adun.app | 11 | {bio} |
+ minc-tools | 11 | {imaging} |
+ gdcm | 10 | {imaging-dev} |
+ lagan | 10 | {bio} |
+ mrtrix3 | 10 | {imaging} |
orthanc-dicomweb | 9 | {imaging,covid-19} |
+ dicomnifti | 8 | {imaging} |
+ libminc | 8 | {imaging-dev} |
librg-utils-perl | 8 | {bio} |
+ mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
+ nifticlib | 8 | {imaging} |
+ nifticlib | 8 | {imaging-dev} |
+ openslide | 8 | {imaging-dev} |
+ openslide | 8 | {imaging} |
orthanc-postgresql | 8 | {imaging} |
+ pixelmed | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
- dicomnifti | 7 | {imaging} |
- libminc | 7 | {imaging-dev} |
- mia | 7 | {imaging} |
+ libncl | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- nifticlib | 7 | {imaging-dev} |
- nifticlib | 7 | {imaging} |
- openslide | 7 | {imaging-dev} |
- openslide | 7 | {imaging} |
- pixelmed | 7 | {imaging} |
- libncl | 6 | {bio} |
- plastimatch | 6 | {imaging} |
+ plastimatch | 7 | {imaging} |
+ salmon | 6 | {bio,covid-19} |
+ treeview | 6 | {bio-phylogeny,bio} |
getdata | 5 | {bio} |
- libdivsufsort | 5 | {bio-dev} |
+ ghmm | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
+ jellyfish1 | 5 | {bio} |
+ king | 5 | {typesetting,imaging} |
obitools | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
- treeview | 5 | {bio-phylogeny,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ canu | 4 | {bio} |
dicompyler | 4 | {oncology} |
elastix | 4 | {imaging} |
- ghmm | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
- jellyfish1 | 4 | {bio} |
- king | 4 | {typesetting,imaging} |
+ embassy-domalign | 4 | {cloud,bio} |
+ lamarc | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ libsbml | 4 | {bio-dev} |
+ melting | 4 | {bio,cloud} |
+ mhap | 4 | {bio-ngs,bio} |
nipype | 4 | {imaging-dev,imaging} |
+ phyutility | 4 | {bio,cloud} |
+ piler | 4 | {bio} |
pymia | 4 | {imaging-dev} |
- salmon | 4 | {bio,covid-19} |
+ rambo-k | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
arden | 3 | {bio,cloud} |
bart-view | 3 | {imaging} |
- bio-tradis | 3 | {bio,bio-dev} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bitseq | 3 | {bio} |
blimps | 3 | {bio} |
- canu | 3 | {bio} |
- embassy-domalign | 3 | {cloud,bio} |
- lamarc | 3 | {bio} |
+ brig | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {cloud,bio} |
+ fastml | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ hinge | 3 | {bio} |
+ ipig | 3 | {bio} |
libbio-mage-utils-perl | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- melting | 3 | {bio,cloud} |
- mhap | 3 | {bio-ngs,bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ mauve-aligner | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
orthanc-gdcm | 3 | {imaging} |
orthanc-python | 3 | {covid-19} |
oscar | 3 | {data,tools,practice} |
- phyutility | 3 | {bio,cloud} |
- piler | 3 | {bio} |
- rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
+ placnet | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
@@ -80,34 +101,16 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
thesias | 3 | {bio,covid-19} |
anfo | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- bitseq | 2 | {bio} |
- brig | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
cat-bat | 2 | {bio,covid-19} |
- clonalframeml | 2 | {covid-19,bio} |
- clonalorigin | 2 | {bio} |
cmtk | 2 | {imaging} |
- delly | 2 | {covid-19,bio} |
dextractor | 2 | {bio,covid-19} |
- embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {cloud,bio} |
- fastml | 2 | {bio} |
- gatb-core | 2 | {bio} |
- hinge | 2 | {bio} |
- ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
libpal-java | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
- placnet | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- proalign | 2 | {bio,bio-phylogeny} |
+ microbegps | 2 | {bio} |
pscan-chip | 2 | {bio} |
python-wdlparse | 2 | {bio-dev} |
qcumber | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
soapaligner | 2 | {bio} |
@@ -119,17 +122,17 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
tvc | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
cufflinks | 1 | {bio,cloud} |
emmax | 1 | {bio} |
+ htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- microbegps | 1 | {bio} |
mssstest | 1 | {tools} |
opencfu | 1 | {laboratory} |
+ papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
@@ -154,7 +157,6 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
insighttoolkit5 | 0 | {imaging-dev} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -189,7 +191,6 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
@@ -197,6 +198,7 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
+ sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
snpeff | 0 | {bio,covid-19} |
@@ -204,6 +206,5 @@ Last-Update: Mon, 31 Jan 2022 01:42:12 +0000
varna | 0 | {bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
- sight | -1 | {imaging-dev} |
-(233 rows)
+(234 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/380c9d69b7eceeedad2faed72e5f7acd965d6b5b
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/380c9d69b7eceeedad2faed72e5f7acd965d6b5b
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